Analysis of interatomic Contacts of Structural Units in PDB entry:
7D99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D99 entry

There are 2 chains in PDB entry 7D99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 82ILE 1079
B
 VAL 82ILE 1079
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 7D99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 90Right-handed alpha
Helix 2
AA2
A
99 104Right-handed alpha
Helix 3
AA3
A
119 124Right-handed alpha
Helix 4
AA4
A
124 131Right-handed alpha
Helix 5
AA5
A
135 140Right-handed alpha
Helix 6
AA6
A
140 164Right-handed alpha
Helix 7
AA7
A
164 177Right-handed alpha
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
193 228Right-handed alpha
Helix 10
AB1
A
239 241Right-handed 310
Helix 11
AB2
A
242 269Right-handed alpha
Helix 12
AB3
A
269 276Right-handed alpha
Helix 13
AB4
A
276 301Right-handed alpha
Helix 14
AB5
A
336 343Right-handed alpha
Helix 15
AB6
A
353 359Right-handed alpha
Helix 16
AB7
A
419 428Right-handed alpha
Helix 17
AB8
A
429 431Right-handed 310
Helix 18
AB9
A
433 439Right-handed 310
Helix 19
AC1
A
446 475Right-handed alpha
Helix 20
AC2
A
478 483Right-handed alpha
Helix 21
AC3
A
484 488Right-handed 310
Helix 22
AC4
A
494 500Right-handed alpha
Helix 23
AC5
A
504 525Right-handed alpha
Helix 24
AC6
A
525 537Right-handed alpha
Helix 25
AC7
A
543 547Right-handed 310
Helix 26
AC8
A
555 570Right-handed alpha
Helix 27
AC9
A
573 602Right-handed alpha
Helix 28
AD1
A
615 634Right-handed alpha
Helix 29
AD2
A
634 659Right-handed alpha
Helix 30
AD3
A
663 681Right-handed alpha
Helix 31
AD4
A
709 719Right-handed alpha
Helix 32
AD5
A
740 756Right-handed alpha
Helix 33
AD6
A
769 781Right-handed alpha
Helix 34
AD7
A
803 821Right-handed alpha
Helix 35
AD8
A
830 834Right-handed 310
Helix 36
AD9
A
854 866Right-handed alpha
Helix 37
AE1
A
887 896Right-handed alpha
Helix 38
AE2
A
896 902Right-handed alpha
Helix 39
AE3
A
1012 1031Right-handed alpha
Helix 40
AE4
A
1050 1062Right-handed alpha
Helix 41
AE5
B
85 90Right-handed alpha
Helix 42
AE6
B
99 104Right-handed alpha
Helix 43
AE7
B
119 124Right-handed alpha
Helix 44
AE8
B
124 131Right-handed alpha
Helix 45
AE9
B
135 140Right-handed alpha
Helix 46
AF1
B
140 164Right-handed alpha
Helix 47
AF2
B
164 177Right-handed alpha
Helix 48
AF3
B
185 191Right-handed alpha
Helix 49
AF4
B
193 228Right-handed alpha
Helix 50
AF5
B
239 241Right-handed 310
Helix 51
AF6
B
242 269Right-handed alpha
Helix 52
AF7
B
269 276Right-handed alpha
Helix 53
AF8
B
276 301Right-handed alpha
Helix 54
AF9
B
336 343Right-handed alpha
Helix 55
AG1
B
353 359Right-handed alpha
Helix 56
AG2
B
419 428Right-handed alpha
Helix 57
AG3
B
429 431Right-handed 310
Helix 58
AG4
B
433 439Right-handed 310
Helix 59
AG5
B
446 475Right-handed alpha
Helix 60
AG6
B
478 483Right-handed alpha
Helix 61
AG7
B
484 488Right-handed 310
Helix 62
AG8
B
494 500Right-handed alpha
Helix 63
AG9
B
504 525Right-handed alpha
Helix 64
AH1
B
525 537Right-handed alpha
Helix 65
AH2
B
543 547Right-handed 310
Helix 66
AH3
B
555 570Right-handed alpha
Helix 67
AH4
B
573 602Right-handed alpha
Helix 68
AH5
B
615 634Right-handed alpha
Helix 69
AH6
B
634 659Right-handed alpha
Helix 70
AH7
B
663 681Right-handed alpha
Helix 71
AH8
B
709 719Right-handed alpha
Helix 72
AH9
B
740 756Right-handed alpha
Helix 73
AI1
B
769 781Right-handed alpha
Helix 74
AI2
B
803 821Right-handed alpha
Helix 75
AI3
B
830 834Right-handed 310
Helix 76
AI4
B
854 866Right-handed alpha
Helix 77
AI5
B
887 896Right-handed alpha
Helix 78
AI6
B
896 902Right-handed alpha
Helix 79
AI7
B
1012 1031Right-handed alpha
Helix 80
AI8
B
1050 1062Right-handed alpha
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There are 6 sheets in PDB entry 7D99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
306 310anti-parallel
Strand 3
A
361 365anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
332 335anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 767first strand
Strand 2
A
725 732parallel
Strand 3
A
694 698parallel
Strand 4
A
790 794parallel
Strand 5
A
824 829parallel
Strand 6
A
1068 1072anti-parallel
Strand 7
A
1036 1040parallel
Strand 8
A
845 849parallel
Strand 9
A
875 881parallel
Strand 10
A
907 911parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
306 310anti-parallel
Strand 3
B
361 365anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
332 335anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
761 767first strand
Strand 2
B
725 732parallel
Strand 3
B
694 698parallel
Strand 4
B
790 794parallel
Strand 5
B
824 829parallel
Strand 6
B
1068 1072anti-parallel
Strand 7
B
1036 1040parallel
Strand 8
B
845 849parallel
Strand 9
B
875 881parallel
Strand 10
B
907 911parallel
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