Analysis of interatomic Contacts of Structural Units in PDB entry:
7D9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D9E entry

There are 2 chains in PDB entry 7D9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 25PRO 361
B
 THR 364LYS 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7D9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
52 68Right-handed alpha
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
129 142Right-handed alpha
Helix 5
AA5
A
145 160Right-handed alpha
Helix 6
AA6
A
164 179Right-handed alpha
Helix 7
AA7
A
183 189Right-handed alpha
Helix 8
AA8
A
199 213Right-handed alpha
Helix 9
AA9
A
213 220Right-handed alpha
Helix 10
AB1
A
220 234Right-handed alpha
Helix 11
AB2
A
238 245Right-handed alpha
Helix 12
AB3
A
270 285Right-handed alpha
Helix 13
AB4
A
285 290Right-handed alpha
Helix 14
AB5
A
296 318Right-handed alpha
Helix 15
AB6
A
327 333Right-handed alpha
Helix 16
AB7
A
333 344Right-handed alpha
Helix 17
AB8
A
351 355Right-handed 310
Helix 18
AB9
B
402 407Right-handed 310
Helix 19
AC1
B
456 458Right-handed 310
Helix 20
AC2
B
459 473Right-handed alpha
Helix 21
AC3
B
477 484Right-handed alpha
Helix 22
AC4
B
506 517Right-handed alpha
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There are 4 sheets in PDB entry 7D9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
B
376 382anti-parallel
Strand 5
B
365 370anti-parallel
Strand 6
A
30 34anti-parallel
Strand 7
B
551 555anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
196 197anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
260 264anti-parallel
Strand 3
B
440 444anti-parallel
Strand 4
B
447 453anti-parallel
Strand 5
B
531 536anti-parallel
Strand 6
B
539 544anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 489first strand
Strand 2
B
496 499anti-parallel
Strand 3
B
519 522parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il