Analysis of interatomic Contacts of Structural Units in PDB entry:
7D9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D9F entry

There are 2 chains in PDB entry 7D9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29LEU 619
B
 ARG 33LEU 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 7D9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
82 96Right-handed alpha
Helix 4
AA4
A
137 142Right-handed alpha
Helix 5
AA5
A
143 154Right-handed alpha
Helix 6
AA6
A
156 158Right-handed 310
Helix 7
AA7
A
159 164Right-handed alpha
Helix 8
AA8
A
167 172Right-handed alpha
Helix 9
AA9
A
181 186Right-handed alpha
Helix 10
AB1
A
204 208Right-handed 310
Helix 11
AB2
A
212 219Right-handed alpha
Helix 12
AB3
A
223 236Right-handed alpha
Helix 13
AB4
A
245 256Right-handed alpha
Helix 14
AB5
A
257 265Right-handed alpha
Helix 15
AB6
A
269 275Right-handed alpha
Helix 16
AB7
A
280 285Right-handed alpha
Helix 17
AB8
A
287 291Right-handed 310
Helix 18
AB9
A
292 299Right-handed alpha
Helix 19
AC1
A
313 322Right-handed alpha
Helix 20
AC2
A
332 344Right-handed alpha
Helix 21
AC3
A
345 348Right-handed 310
Helix 22
AC4
A
362 366Right-handed 310
Helix 23
AC5
A
414 416Right-handed 310
Helix 24
AC6
A
417 422Right-handed alpha
Helix 25
AC7
A
426 435Right-handed alpha
Helix 26
AC8
A
451 458Right-handed alpha
Helix 27
AC9
A
509 523Right-handed alpha
Helix 28
AD1
A
525 542Right-handed alpha
Helix 29
AD2
A
543 545Right-handed 310
Helix 30
AD3
A
547 551Right-handed alpha
Helix 31
AD4
A
574 586Right-handed alpha
Helix 32
AD5
A
596 601Right-handed 310
Helix 33
AD6
A
604 619Right-handed alpha
Helix 34
AD7
B
35 39Right-handed 310
Helix 35
AD8
B
50 58Right-handed alpha
Helix 36
AD9
B
82 96Right-handed alpha
Helix 37
AE1
B
137 142Right-handed alpha
Helix 38
AE2
B
143 153Right-handed alpha
Helix 39
AE3
B
156 158Right-handed 310
Helix 40
AE4
B
159 164Right-handed alpha
Helix 41
AE5
B
167 172Right-handed alpha
Helix 42
AE6
B
181 186Right-handed alpha
Helix 43
AE7
B
204 208Right-handed 310
Helix 44
AE8
B
212 218Right-handed alpha
Helix 45
AE9
B
223 236Right-handed alpha
Helix 46
AF1
B
245 256Right-handed alpha
Helix 47
AF2
B
257 265Right-handed alpha
Helix 48
AF3
B
269 275Right-handed alpha
Helix 49
AF4
B
280 285Right-handed alpha
Helix 50
AF5
B
287 291Right-handed 310
Helix 51
AF6
B
292 299Right-handed alpha
Helix 52
AF7
B
313 322Right-handed alpha
Helix 53
AF8
B
332 344Right-handed alpha
Helix 54
AF9
B
345 348Right-handed 310
Helix 55
AG1
B
362 366Right-handed 310
Helix 56
AG2
B
414 416Right-handed 310
Helix 57
AG3
B
417 422Right-handed alpha
Helix 58
AG4
B
426 435Right-handed alpha
Helix 59
AG5
B
451 458Right-handed alpha
Helix 60
AG6
B
509 523Right-handed alpha
Helix 61
AG7
B
525 542Right-handed alpha
Helix 62
AG8
B
543 545Right-handed 310
Helix 63
AG9
B
547 551Right-handed alpha
Helix 64
AH1
B
574 586Right-handed alpha
Helix 65
AH2
B
596 601Right-handed 310
Helix 66
AH3
B
604 619Right-handed alpha
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There are 8 sheets in PDB entry 7D9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
552 560parallel
Strand 3
A
441 448anti-parallel
Strand 4
A
493 499anti-parallel
Strand 5
A
469 474anti-parallel
Strand 6
A
459 463anti-parallel
Strand 7
A
175 180parallel
Strand 8
A
189 192anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
101 104parallel
Strand 3
A
73 79parallel
Strand 4
A
400 411parallel
Strand 5
A
390 397anti-parallel
Strand 6
A
379 387anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
101 104parallel
Strand 3
A
73 79parallel
Strand 4
A
400 411parallel
Strand 5
A
592 594parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
124 129anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
552 564parallel
Strand 3
B
439 448anti-parallel
Strand 4
B
493 499anti-parallel
Strand 5
B
469 474anti-parallel
Strand 6
B
459 463anti-parallel
Strand 7
B
175 180parallel
Strand 8
B
189 192anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
101 104parallel
Strand 3
B
73 79parallel
Strand 4
B
400 411parallel
Strand 5
B
390 397anti-parallel
Strand 6
B
379 387anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
101 104parallel
Strand 3
B
73 79parallel
Strand 4
B
400 411parallel
Strand 5
B
592 594parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 121first strand
Strand 2
B
124 129anti-parallel
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