Analysis of interatomic Contacts of Structural Units in PDB entry:
7DA2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DA2 entry

There are 5 chains in PDB entry 7DA2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7GLU 102
C
 ARG 12LEU 103
B
 GLY 8VAL 82
D
 GLY 9VAL 82
E
 ASP 673SER 804
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 7DA2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 39Right-handed alpha
Helix 2
AA2
A
43 72Right-handed alpha
Helix 3
AA3
A
78 86Right-handed alpha
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
C
13 39Right-handed alpha
Helix 6
AA6
C
43 72Right-handed alpha
Helix 7
AA7
C
78 86Right-handed alpha
Helix 8
AA8
C
89 102Right-handed alpha
Helix 9
AA9
B
11 23Right-handed alpha
Helix 10
AB1
B
31 60Right-handed alpha
Helix 11
AB2
B
66 82Right-handed alpha
Helix 12
AB3
D
11 23Right-handed alpha
Helix 13
AB4
D
31 60Right-handed alpha
Helix 14
AB5
D
66 82Right-handed alpha
Helix 15
AB6
E
674 679Right-handed alpha
Helix 16
AB7
E
686 697Right-handed alpha
Helix 17
AB8
E
740 746Right-handed 310
Helix 18
AB9
E
756 774Right-handed alpha
Helix 19
AC1
E
775 786Right-handed alpha
Helix 20
AC2
E
787 789Right-handed 310
Helix 21
AC3
E
790 794Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 7DA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
B
64 65parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
B
29 30parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
D
64 65parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
D
29 30parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
707 709first strand
Strand 2
E
732 734parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il