Analysis of interatomic Contacts of Structural Units in PDB entry:
7DA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DA5 entry

There are 2 chains in PDB entry 7DA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 16ALA 449
B
ALA 23VAL 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 7DA5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
55 84Right-handed alpha
Helix 4
AA4
A
85 104Right-handed alpha
Helix 5
AA5
A
109 139Right-handed alpha
Helix 6
AA6
A
142 172Right-handed alpha
Helix 7
AA7
A
173 192Right-handed alpha
Helix 8
AA8
A
262 274Right-handed alpha
Helix 9
AA9
A
275 277Right-handed 310
Helix 10
AB1
A
279 290Right-handed alpha
Helix 11
AB2
A
296 321Right-handed alpha
Helix 12
AB3
A
325 329Right-handed 310
Helix 13
AB4
A
330 346Right-handed alpha
Helix 14
AB5
A
353 383Right-handed alpha
Helix 15
AB6
A
386 415Right-handed alpha
Helix 16
AB7
A
419 449Right-handed alpha
Helix 17
AB8
B
79 81Right-handed 310
Helix 18
AB9
B
153 156Right-handed 310
Helix 19
AC1
B
204 238Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7DA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
25 33first strand
Strand 2
B
36 44anti-parallel
Strand 3
B
71 77anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 63first strand
Strand 2
B
53 56anti-parallel
Strand 3
B
84 89anti-parallel
Strand 4
B
95 100anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 109first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
158 163anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
113 117first strand
Strand 2
B
192 203parallel
Strand 3
B
181 189anti-parallel
Strand 4
B
136 141anti-parallel
Strand 5
B
148 150anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il