Analysis of interatomic Contacts of Structural Units in PDB entry:
7DA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DA9 entry

There are 2 chains in PDB entry 7DA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5PHE 392
B
 GLN 5PHE 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7DA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
49 51Right-handed 310
Helix 3
AA3
A
52 59Right-handed alpha
Helix 4
AA4
A
61 69Right-handed alpha
Helix 5
AA5
A
91 94Right-handed 310
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
168 173Right-handed alpha
Helix 8
AA8
A
197 201Right-handed 310
Helix 9
AA9
A
237 239Right-handed 310
Helix 10
AB1
A
240 253Right-handed alpha
Helix 11
AB2
A
286 288Right-handed 310
Helix 12
AB3
A
297 320Right-handed alpha
Helix 13
AB4
A
324 341Right-handed alpha
Helix 14
AB5
A
341 355Right-handed alpha
Helix 15
AB6
A
359 374Right-handed alpha
Helix 16
AB7
A
375 384Right-handed alpha
Helix 17
AB8
A
385 390Right-handed 310
Helix 18
AB9
B
13 26Right-handed alpha
Helix 19
AC1
B
52 59Right-handed alpha
Helix 20
AC2
B
61 69Right-handed alpha
Helix 21
AC3
B
91 94Right-handed 310
Helix 22
AC4
B
106 120Right-handed alpha
Helix 23
AC5
B
168 173Right-handed alpha
Helix 24
AC6
B
197 201Right-handed 310
Helix 25
AC7
B
237 239Right-handed 310
Helix 26
AC8
B
240 253Right-handed alpha
Helix 27
AC9
B
286 288Right-handed 310
Helix 28
AD1
B
297 321Right-handed alpha
Helix 29
AD2
B
325 341Right-handed alpha
Helix 30
AD3
B
341 355Right-handed alpha
Helix 31
AD4
B
359 374Right-handed alpha
Helix 32
AD5
B
375 384Right-handed alpha
Helix 33
AD6
B
385 390Right-handed 310
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There are 9 sheets in PDB entry 7DA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
30 33parallel
Strand 3
A
7 10parallel
Strand 4
A
159 162parallel
Strand 5
A
282 284parallel
Strand 6
A
278 279anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
102 104anti-parallel
Strand 3
A
70 72anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
205 209parallel
Strand 4
A
215 219anti-parallel
Strand 5
A
225 232anti-parallel
Strand 6
A
179 194anti-parallel
Strand 7
A
260 274anti-parallel
Strand 8
A
290 291anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
154 157anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
30 33parallel
Strand 3
B
7 10parallel
Strand 4
B
159 162parallel
Strand 5
B
282 284parallel
Strand 6
B
278 279anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
102 104anti-parallel
Strand 3
B
70 72anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
205 209parallel
Strand 4
B
215 219anti-parallel
Strand 5
B
225 232anti-parallel
Strand 6
B
187 194anti-parallel
Strand 7
B
260 267anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
154 157anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
270 273anti-parallel
Strand 3
B
290 291anti-parallel
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