Analysis of interatomic Contacts of Structural Units in PDB entry:
7DAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DAK entry

There are 2 chains in PDB entry 7DAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 94PHE 254
B
 PRO 91PHE 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 7DAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 131Right-handed alpha
Helix 2
AA2
A
137 147Right-handed alpha
Helix 3
AA3
A
194 197Right-handed 310
Helix 4
AA4
A
200 216Right-handed alpha
Helix 5
AA5
A
226 228Right-handed 310
Helix 6
AA6
A
229 236Right-handed alpha
Helix 7
AA7
A
242 245Right-handed 310
Helix 8
AA8
B
120 132Right-handed alpha
Helix 9
AA9
B
137 147Right-handed alpha
Helix 10
AB1
B
194 197Right-handed 310
Helix 11
AB2
B
200 216Right-handed alpha
Helix 12
AB3
B
226 228Right-handed 310
Helix 13
AB4
B
229 236Right-handed alpha
Helix 14
AB5
B
242 245Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 7DAK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
171 179anti-parallel
Strand 5
A
184 192anti-parallel
Strand 6
A
220 225parallel
Strand 7
B
246 250anti-parallel
Strand 8
A
238 240anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
110 114anti-parallel
Strand 3
B
150 157anti-parallel
Strand 4
B
171 179anti-parallel
Strand 5
B
184 192anti-parallel
Strand 6
B
220 225parallel
Strand 7
A
246 250anti-parallel
Strand 8
B
238 240anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il