Analysis of interatomic Contacts of Structural Units in PDB entry:
7DAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DAM entry

There are 2 chains in PDB entry 7DAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9GLU 304
B
 GLN 10MET 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7DAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
59 61Right-handed 310
Helix 3
AA3
A
62 69Right-handed alpha
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
136 148Right-handed alpha
Helix 6
AA6
A
159 161Right-handed 310
Helix 7
AA7
A
162 167Right-handed alpha
Helix 8
AA8
A
179 185Right-handed alpha
Helix 9
AA9
A
209 231Right-handed alpha
Helix 10
AB1
A
243 249Right-handed alpha
Helix 11
AB2
A
279 289Right-handed alpha
Helix 12
AB3
B
20 33Right-handed alpha
Helix 13
AB4
B
59 61Right-handed 310
Helix 14
AB5
B
62 69Right-handed alpha
Helix 15
AB6
B
79 92Right-handed alpha
Helix 16
AB7
B
136 148Right-handed alpha
Helix 17
AB8
B
159 161Right-handed 310
Helix 18
AB9
B
162 167Right-handed alpha
Helix 19
AC1
B
179 185Right-handed alpha
Helix 20
AC2
B
210 231Right-handed alpha
Helix 21
AC3
B
244 248Right-handed alpha
Helix 22
AC4
B
279 289Right-handed alpha
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There are 6 sheets in PDB entry 7DAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
12 17parallel
Strand 4
A
74 78parallel
Strand 5
A
198 202anti-parallel
Strand 6
A
99 103anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
131 134parallel
Strand 3
A
171 176parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
187 196anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
292 298anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
53 58anti-parallel
Strand 3
B
12 17parallel
Strand 4
B
74 78parallel
Strand 5
B
198 202anti-parallel
Strand 6
B
99 103anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
131 134parallel
Strand 3
B
171 176parallel
Strand 4
B
109 116anti-parallel
Strand 5
B
187 196anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 237first strand
Strand 2
B
292 298anti-parallel
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