Analysis of interatomic Contacts of Structural Units in PDB entry:
7DAN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DAN entry

There are 3 chains in PDB entry 7DAN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	PRO 664
B	MET 1	PRO 664
A	MET 1	GLY 22

There are 46 helices in PDB entry 7DAN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	175	180	Right-handed 310
Helix 2	AA2	C	192	196	Right-handed alpha
Helix 3	AA3	C	204	209	Right-handed alpha
Helix 4	AA4	C	317	328	Right-handed alpha
Helix 5	AA5	C	347	351	Right-handed alpha
Helix 6	AA6	C	378	384	Right-handed alpha
Helix 7	AA7	C	443	453	Right-handed alpha
Helix 8	AA8	C	470	473	Right-handed 310
Helix 9	AA9	C	493	505	Right-handed alpha
Helix 10	AB1	C	507	511	Right-handed 310
Helix 11	AB2	C	527	533	Right-handed alpha
Helix 12	AB3	C	534	560	Right-handed alpha
Helix 13	AB4	C	611	622	Right-handed alpha
Helix 14	AB5	C	623	625	Right-handed 310
Helix 15	AB6	C	643	647	Right-handed alpha
Helix 16	AB7	B	175	180	Right-handed 310
Helix 17	AB8	B	192	196	Right-handed alpha
Helix 18	AB9	B	204	209	Right-handed alpha
Helix 19	AC1	B	222	224	Right-handed 310
Helix 20	AC2	B	317	328	Right-handed alpha
Helix 21	AC3	B	347	351	Right-handed alpha
Helix 22	AC4	B	378	384	Right-handed alpha
Helix 23	AC5	B	443	454	Right-handed alpha
Helix 24	AC6	B	470	473	Right-handed 310
Helix 25	AC7	B	493	505	Right-handed alpha
Helix 26	AC8	B	507	511	Right-handed 310
Helix 27	AC9	B	527	533	Right-handed alpha
Helix 28	AD1	B	534	560	Right-handed alpha
Helix 29	AD2	B	611	622	Right-handed alpha
Helix 30	AD3	B	623	625	Right-handed 310
Helix 31	AD4	B	643	647	Right-handed alpha
Helix 32	AD5	A	175	180	Right-handed 310
Helix 33	AD6	A	191	195	Right-handed 310
Helix 34	AD7	A	204	209	Right-handed alpha
Helix 35	AD8	A	317	328	Right-handed alpha
Helix 36	AD9	A	347	351	Right-handed alpha
Helix 37	AE1	A	378	384	Right-handed alpha
Helix 38	AE2	A	443	453	Right-handed alpha
Helix 39	AE3	A	470	473	Right-handed 310
Helix 40	AE4	A	493	505	Right-handed alpha
Helix 41	AE5	A	507	511	Right-handed 310
Helix 42	AE6	A	527	533	Right-handed alpha
Helix 43	AE7	A	534	560	Right-handed alpha
Helix 44	AE8	A	611	622	Right-handed alpha
Helix 45	AE9	A	623	625	Right-handed 310
Helix 46	AF1	A	643	647	Right-handed alpha

There are 33 sheets in PDB entry 7DAN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	9	first strand
Strand 2	C	24	29	parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	49	54	anti-parallel
Strand 5	C	61	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	20	first strand
Strand 2	C	106	120	parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	68	69	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	20	first strand
Strand 2	C	106	120	parallel
Strand 3	C	181	188	anti-parallel
Strand 4	C	246	253	anti-parallel
Strand 5	C	211	216	anti-parallel
Strand 6	C	226	230	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	282	293	parallel
Strand 3	C	264	273	anti-parallel
Strand 4	C	197	202	anti-parallel
Strand 5	C	236	238	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	337	first strand
Strand 2	C	305	311	parallel
Strand 3	C	648	652	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	357	first strand
Strand 2	C	364	369	anti-parallel
Strand 3	C	390	393	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	428	432	anti-parallel
Strand 3	C	459	462	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	418	first strand
Strand 2	C	421	423	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	479	first strand
Strand 2	C	486	492	anti-parallel
Strand 3	C	566	570	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	574	first strand
Strand 2	C	581	582	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	593	first strand
Strand 2	C	596	600	anti-parallel
Strand 3	C	627	631	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	24	29	parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	49	54	anti-parallel
Strand 5	B	61	62	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	120	parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	68	69	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	120	parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	247	253	anti-parallel
Strand 5	B	211	216	anti-parallel
Strand 6	B	226	230	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	282	293	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	197	202	anti-parallel
Strand 5	B	236	238	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	305	311	parallel
Strand 3	B	648	652	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	357	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	390	393	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	428	430	anti-parallel
Strand 3	B	459	460	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	421	423	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	486	492	anti-parallel
Strand 3	B	566	570	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	581	582	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	593	first strand
Strand 2	B	596	600	anti-parallel
Strand 3	B	627	631	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	24	29	parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	49	54	anti-parallel
Strand 5	A	61	62	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	120	parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	68	69	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	120	parallel
Strand 3	A	181	188	anti-parallel
Strand 4	A	246	253	anti-parallel
Strand 5	A	211	216	anti-parallel
Strand 6	A	226	230	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	197	202	anti-parallel
Strand 5	A	236	238	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	305	311	parallel
Strand 3	A	648	652	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	357	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	390	393	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	459	462	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	486	492	anti-parallel
Strand 3	A	566	570	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	581	582	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	A	596	600	anti-parallel
Strand 3	A	627	631	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DAN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DAN