Analysis of interatomic Contacts of Structural Units in PDB entry:
7DB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DB5 entry

There is 1 chain in PDB entry 7DB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 22ALA 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7DB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
30 41Right-handed alpha
Helix 3
AA3
A
49 53Right-handed 310
Helix 4
AA4
A
68 70Right-handed 310
Helix 5
AA5
A
71 76Right-handed alpha
Helix 6
AA6
A
79 86Right-handed alpha
Helix 7
AA7
A
87 90Right-handed 310
Helix 8
AA8
A
96 107Right-handed alpha
Helix 9
AA9
A
133 138Right-handed alpha
Helix 10
AB1
A
143 155Right-handed alpha
Helix 11
AB2
A
185 189Right-handed 310
Helix 12
AB3
A
190 198Right-handed alpha
Helix 13
AB4
A
198 210Right-handed alpha
Helix 14
AB5
A
220 224Right-handed 310
Helix 15
AB6
A
227 246Right-handed alpha
Helix 16
AB7
A
253 256Right-handed 310
Helix 17
AB8
A
257 264Right-handed 310
Helix 18
AB9
A
307 322Right-handed alpha
Helix 19
AC1
A
338 356Right-handed alpha
Helix 20
AC2
A
357 359Right-handed 310
Helix 21
AC3
A
380 382Right-handed 310
Helix 22
AC4
A
393 395Right-handed 310
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There are 7 sheets in PDB entry 7DB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
215 217parallel
Strand 3
A
158 163parallel
Strand 4
A
111 117parallel
Strand 5
A
42 46parallel
Strand 6
A
324 329parallel
Strand 7
A
286 291parallel
Strand 8
A
269 273parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
63 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 379first strand
Strand 2
A
384 389anti-parallel
Strand 3
A
451 457anti-parallel
Strand 4
A
407 412anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
434 442anti-parallel
Strand 3
A
419 427anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
595 603anti-parallel
Strand 3
A
502 511anti-parallel
Strand 4
A
557 567anti-parallel
Strand 5
A
545 547anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
595 603anti-parallel
Strand 3
A
582 583parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
491 498anti-parallel
Strand 3
A
571 578anti-parallel
Strand 4
A
527 532anti-parallel
Strand 5
A
535 540anti-parallel
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