Analysis of interatomic Contacts of Structural Units in PDB entry:
7DB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DB6 entry

There are 5 chains in PDB entry 7DB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	ASP 5	ASN 340
C	ILE 9	PHE 61
E	VAL 2	LEU 235
D	ARG 22	TYR 306

There are 27 helices in PDB entry 7DB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	32	Right-handed alpha
Helix 2	AA2	A	212	216	Right-handed 310
Helix 3	AA3	A	227	231	Right-handed 310
Helix 4	AA4	A	242	254	Right-handed alpha
Helix 5	AA5	A	277	281	Right-handed 310
Helix 6	AA6	A	296	310	Right-handed alpha
Helix 7	AA7	A	328	332	Right-handed 310
Helix 8	AA8	A	336	352	Right-handed alpha
Helix 9	AA9	B	6	25	Right-handed alpha
Helix 10	AB1	B	29	35	Right-handed alpha
Helix 11	AB2	C	12	22	Right-handed alpha
Helix 12	AB3	C	33	44	Right-handed alpha
Helix 13	AB4	E	28	32	Right-handed 310
Helix 14	AB5	E	53	56	Right-handed 310
Helix 15	AB6	D	24	51	Right-handed alpha
Helix 16	AB7	D	60	79	Right-handed alpha
Helix 17	AB8	D	80	91	Right-handed alpha
Helix 18	AB9	D	96	130	Right-handed alpha
Helix 19	AC1	D	134	139	Right-handed alpha
Helix 20	AC2	D	142	160	Right-handed alpha
Helix 21	AC3	D	184	193	Right-handed alpha
Helix 22	AC4	D	197	217	Right-handed alpha
Helix 23	AC5	D	233	242	Right-handed alpha
Helix 24	AC6	D	244	261	Right-handed alpha
Helix 25	AC7	D	264	272	Right-handed alpha
Helix 26	AC8	D	273	298	Right-handed alpha
Helix 27	AC9	D	299	304	Right-handed alpha

There are 13 sheets in PDB entry 7DB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	194	199	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	224	parallel
Strand 5	A	264	267	parallel
Strand 6	A	319	320	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	40	anti-parallel
Strand 5	E	44	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	143	149	anti-parallel
Strand 3	E	199	204	anti-parallel
Strand 4	E	191	196	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	231	234	parallel
Strand 3	E	213	219	anti-parallel
Strand 4	E	162	167	anti-parallel
Strand 5	E	174	177	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	177	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DB6