Analysis of interatomic Contacts of Structural Units in PDB entry:
7DB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DB8 entry

There are 2 chains in PDB entry 7DB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 75	ALA 341
B	MET 1	ALA 835

There are 41 helices in PDB entry 7DB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	93	Right-handed alpha
Helix 2	AA2	A	110	125	Right-handed alpha
Helix 3	AA3	A	139	143	Right-handed alpha
Helix 4	AA4	A	144	147	Right-handed 310
Helix 5	AA5	A	152	156	Right-handed 310
Helix 6	AA6	A	176	187	Right-handed alpha
Helix 7	AA7	A	226	243	Right-handed alpha
Helix 8	AA8	A	287	293	Right-handed alpha
Helix 9	AA9	A	310	319	Right-handed alpha
Helix 10	AB1	A	323	329	Right-handed alpha
Helix 11	AB2	A	330	335	Right-handed alpha
Helix 12	AB3	A	336	338	Right-handed 310
Helix 13	AB4	B	5	14	Right-handed alpha
Helix 14	AB5	B	22	34	Right-handed alpha
Helix 15	AB6	B	153	159	Right-handed alpha
Helix 16	AB7	B	173	177	Right-handed 310
Helix 17	AB8	B	178	190	Right-handed alpha
Helix 18	AB9	B	219	222	Right-handed 310
Helix 19	AC1	B	241	251	Right-handed alpha
Helix 20	AC2	B	257	271	Right-handed alpha
Helix 21	AC3	B	280	282	Right-handed 310
Helix 22	AC4	B	330	333	Right-handed 310
Helix 23	AC5	B	349	361	Right-handed alpha
Helix 24	AC6	B	364	371	Right-handed alpha
Helix 25	AC7	B	375	377	Right-handed 310
Helix 26	AC8	B	378	395	Right-handed alpha
Helix 27	AC9	B	424	431	Right-handed alpha
Helix 28	AD1	B	437	446	Right-handed alpha
Helix 29	AD2	B	470	483	Right-handed alpha
Helix 30	AD3	B	484	487	Right-handed 310
Helix 31	AD4	B	501	517	Right-handed alpha
Helix 32	AD5	B	531	536	Right-handed alpha
Helix 33	AD6	B	542	546	Right-handed 310
Helix 34	AD7	B	565	579	Right-handed alpha
Helix 35	AD8	B	612	622	Right-handed alpha
Helix 36	AD9	B	651	667	Right-handed alpha
Helix 37	AE1	B	702	710	Right-handed alpha
Helix 38	AE2	B	723	725	Right-handed 310
Helix 39	AE3	B	755	768	Right-handed alpha
Helix 40	AE4	B	782	786	Right-handed 310
Helix 41	AE5	B	806	826	Right-handed alpha

There are 15 sheets in PDB entry 7DB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	191	200	parallel
Strand 3	A	212	222	anti-parallel
Strand 4	A	302	309	anti-parallel
Strand 5	A	276	286	anti-parallel
Strand 6	A	258	268	anti-parallel
Strand 7	A	248	253	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	170	172	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	163	168	anti-parallel
Strand 3	B	36	42	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	85	first strand
Strand 2	B	68	74	anti-parallel
Strand 3	B	50	61	anti-parallel
Strand 4	B	95	99	anti-parallel
Strand 5	B	124	125	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	85	first strand
Strand 2	B	68	74	anti-parallel
Strand 3	B	50	61	anti-parallel
Strand 4	B	95	99	anti-parallel
Strand 5	B	142	143	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	109	110	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	119	120	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	286	290	parallel
Strand 3	B	312	315	anti-parallel
Strand 4	B	320	323	anti-parallel
Strand 5	B	327	328	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	225	232	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	225	232	anti-parallel
Strand 4	B	403	405	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	304	306	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	422	first strand
Strand 2	B	456	460	anti-parallel
Strand 3	B	449	453	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	584	591	parallel
Strand 3	B	628	635	anti-parallel
Strand 4	B	716	721	anti-parallel
Strand 5	B	693	701	anti-parallel
Strand 6	B	680	690	anti-parallel
Strand 7	B	671	674	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	639	first strand
Strand 2	B	648	649	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	780	first strand
Strand 2	B	789	798	anti-parallel
Strand 3	B	742	751	anti-parallel
Strand 4	B	828	834	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DB8