Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DBC entry

There are 6 chains in PDB entry 7DBC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 438
B	ARG 2	THR 429
C	MET 1	GLU 441
D	MET 1	ASP 431
E	MET 4	ALA 141
F	MET 1	HIS 380

There are100 helices in PDB entry 7DBC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	48	51	Right-handed 310
Helix 3	AA3	A	72	80	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	108	113	Right-handed alpha
Helix 7	AA7	A	114	128	Right-handed alpha
Helix 8	AA8	A	143	161	Right-handed alpha
Helix 9	AA9	A	174	178	Right-handed 310
Helix 10	AB1	A	182	195	Right-handed alpha
Helix 11	AB2	A	196	198	Right-handed 310
Helix 12	AB3	A	206	218	Right-handed alpha
Helix 13	AB4	A	223	244	Right-handed alpha
Helix 14	AB5	A	251	260	Right-handed alpha
Helix 15	AB6	A	287	294	Right-handed alpha
Helix 16	AB7	A	295	301	Right-handed 310
Helix 17	AB8	A	306	310	Right-handed 310
Helix 18	AB9	A	324	339	Right-handed alpha
Helix 19	AC1	A	384	400	Right-handed alpha
Helix 20	AC2	A	404	410	Right-handed alpha
Helix 21	AC3	A	414	437	Right-handed alpha
Helix 22	AC4	B	10	28	Right-handed alpha
Helix 23	AC5	B	40	44	Right-handed 310
Helix 24	AC6	B	46	49	Right-handed 310
Helix 25	AC7	B	70	78	Right-handed alpha
Helix 26	AC8	B	81	85	Right-handed 310
Helix 27	AC9	B	86	88	Right-handed 310
Helix 28	AD1	B	100	106	Right-handed alpha
Helix 29	AD2	B	107	126	Right-handed alpha
Helix 30	AD3	B	142	159	Right-handed alpha
Helix 31	AD4	B	180	196	Right-handed alpha
Helix 32	AD5	B	204	214	Right-handed alpha
Helix 33	AD6	B	221	242	Right-handed alpha
Helix 34	AD7	B	249	258	Right-handed alpha
Helix 35	AD8	B	285	294	Right-handed alpha
Helix 36	AD9	B	295	299	Right-handed 310
Helix 37	AE1	B	304	308	Right-handed 310
Helix 38	AE2	B	322	337	Right-handed alpha
Helix 39	AE3	B	338	341	Right-handed 310
Helix 40	AE4	B	374	390	Right-handed alpha
Helix 41	AE5	B	395	400	Right-handed alpha
Helix 42	AE6	B	404	427	Right-handed alpha
Helix 43	AE7	C	10	29	Right-handed alpha
Helix 44	AE8	C	47	51	Right-handed 310
Helix 45	AE9	C	72	81	Right-handed alpha
Helix 46	AF1	C	88	90	Right-handed 310
Helix 47	AF2	C	102	108	Right-handed alpha
Helix 48	AF3	C	110	113	Right-handed 310
Helix 49	AF4	C	114	127	Right-handed alpha
Helix 50	AF5	C	143	161	Right-handed alpha
Helix 51	AF6	C	182	195	Right-handed alpha
Helix 52	AF7	C	196	198	Right-handed 310
Helix 53	AF8	C	206	217	Right-handed alpha
Helix 54	AF9	C	223	244	Right-handed alpha
Helix 55	AG1	C	251	260	Right-handed alpha
Helix 56	AG2	C	277	282	Right-handed alpha
Helix 57	AG3	C	287	295	Right-handed alpha
Helix 58	AG4	C	296	301	Right-handed 310
Helix 59	AG5	C	306	310	Right-handed 310
Helix 60	AG6	C	324	337	Right-handed alpha
Helix 61	AG7	C	384	400	Right-handed alpha
Helix 62	AG8	C	404	410	Right-handed alpha
Helix 63	AG9	C	414	437	Right-handed alpha
Helix 64	AH1	D	10	28	Right-handed alpha
Helix 65	AH2	D	40	44	Right-handed 310
Helix 66	AH3	D	46	49	Right-handed 310
Helix 67	AH4	D	70	78	Right-handed alpha
Helix 68	AH5	D	81	85	Right-handed 310
Helix 69	AH6	D	86	88	Right-handed 310
Helix 70	AH7	D	100	106	Right-handed alpha
Helix 71	AH8	D	107	125	Right-handed alpha
Helix 72	AH9	D	142	157	Right-handed alpha
Helix 73	AI1	D	180	196	Right-handed alpha
Helix 74	AI2	D	204	214	Right-handed alpha
Helix 75	AI3	D	221	237	Right-handed alpha
Helix 76	AI4	D	237	242	Right-handed alpha
Helix 77	AI5	D	249	258	Right-handed alpha
Helix 78	AI6	D	285	294	Right-handed alpha
Helix 79	AI7	D	295	299	Right-handed 310
Helix 80	AI8	D	304	308	Right-handed 310
Helix 81	AI9	D	322	337	Right-handed alpha
Helix 82	AJ1	D	338	341	Right-handed 310
Helix 83	AJ2	D	374	390	Right-handed alpha
Helix 84	AJ3	D	395	400	Right-handed alpha
Helix 85	AJ4	D	405	428	Right-handed alpha
Helix 86	AJ5	E	44	141	Right-handed alpha
Helix 87	AJ6	F	11	24	Right-handed alpha
Helix 88	AJ7	F	48	52	Right-handed 310
Helix 89	AJ8	F	68	73	Right-handed alpha
Helix 90	AJ9	F	73	84	Right-handed alpha
Helix 91	AK1	F	127	140	Right-handed alpha
Helix 92	AK2	F	165	174	Right-handed alpha
Helix 93	AK3	F	235	239	Right-handed 310
Helix 94	AK4	F	242	250	Right-handed alpha
Helix 95	AK5	F	257	259	Right-handed 310
Helix 96	AK6	F	263	276	Right-handed alpha
Helix 97	AK7	F	278	283	Right-handed alpha
Helix 98	AK8	F	283	303	Right-handed alpha
Helix 99	AK9	F	339	341	Right-handed 310
Helix 100	AL1	F	342	355	Right-handed alpha

There are 14 sheets in PDB entry 7DBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	349	356	parallel
Strand 5	E	15	23	anti-parallel
Strand 6	E	5	11	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	4	9	parallel
Strand 4	B	132	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	363	371	anti-parallel
Strand 9	B	310	319	anti-parallel
Strand 10	B	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	4	9	parallel
Strand 4	C	134	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	352	356	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	170	parallel
Strand 6	D	198	203	parallel
Strand 7	D	265	271	parallel
Strand 8	D	363	371	anti-parallel
Strand 9	D	310	319	anti-parallel
Strand 10	D	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	58	61	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	2	6	parallel
Strand 3	F	39	41	parallel
Strand 4	F	61	62	parallel
Strand 5	F	310	311	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	180	184	anti-parallel
Strand 3	F	147	150	anti-parallel
Strand 4	F	161	163	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	262	first strand
Strand 2	F	220	223	anti-parallel
Strand 3	F	199	207	anti-parallel
Strand 4	F	313	321	anti-parallel
Strand 5	F	327	333	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	262	first strand
Strand 2	F	220	223	anti-parallel
Strand 3	F	199	207	anti-parallel
Strand 4	F	213	216	anti-parallel
Strand 5	F	375	378	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DBC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBC