Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DBE entry

There are 4 chains in PDB entry 7DBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	TYR 333
B	ASN 2	TYR 333
C	ASN 2	TYR 333
D	ASN 2	TYR 333

There are 32 helices in PDB entry 7DBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	65	Right-handed alpha
Helix 2	AA2	A	82	97	Right-handed alpha
Helix 3	AA3	A	104	120	Right-handed alpha
Helix 4	AA4	A	162	169	Right-handed alpha
Helix 5	AA5	A	195	209	Right-handed alpha
Helix 6	AA6	A	248	261	Right-handed alpha
Helix 7	AA7	A	271	277	Right-handed alpha
Helix 8	AA8	A	307	320	Right-handed alpha
Helix 9	AA9	B	60	65	Right-handed alpha
Helix 10	AB1	B	82	98	Right-handed alpha
Helix 11	AB2	B	104	120	Right-handed alpha
Helix 12	AB3	B	162	169	Right-handed alpha
Helix 13	AB4	B	195	208	Right-handed alpha
Helix 14	AB5	B	248	261	Right-handed alpha
Helix 15	AB6	B	271	278	Right-handed alpha
Helix 16	AB7	B	307	320	Right-handed alpha
Helix 17	AB8	C	60	65	Right-handed alpha
Helix 18	AB9	C	82	97	Right-handed alpha
Helix 19	AC1	C	104	120	Right-handed alpha
Helix 20	AC2	C	162	169	Right-handed alpha
Helix 21	AC3	C	195	208	Right-handed alpha
Helix 22	AC4	C	248	261	Right-handed alpha
Helix 23	AC5	C	271	277	Right-handed alpha
Helix 24	AC6	C	307	320	Right-handed alpha
Helix 25	AC7	D	60	65	Right-handed alpha
Helix 26	AC8	D	82	97	Right-handed alpha
Helix 27	AC9	D	104	120	Right-handed alpha
Helix 28	AD1	D	162	169	Right-handed alpha
Helix 29	AD2	D	195	208	Right-handed alpha
Helix 30	AD3	D	248	261	Right-handed alpha
Helix 31	AD4	D	271	277	Right-handed alpha
Helix 32	AD5	D	307	321	Right-handed alpha

There are 14 sheets in PDB entry 7DBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	124	131	anti-parallel
Strand 5	A	68	76	anti-parallel
Strand 6	A	79	81	anti-parallel
Strand 7	A	328	330	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	B	55	57	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	170	174	parallel
Strand 3	A	289	296	parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	228	234	anti-parallel
Strand 6	A	237	240	anti-parallel
Strand 7	A	264	267	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	228	234	anti-parallel
Strand 3	A	280	285	anti-parallel
Strand 4	A	289	296	anti-parallel
Strand 5	A	299	300	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	41	44	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	124	131	anti-parallel
Strand 5	B	68	76	anti-parallel
Strand 6	B	79	81	anti-parallel
Strand 7	B	328	330	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	170	174	parallel
Strand 3	B	289	296	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	228	234	anti-parallel
Strand 6	B	237	240	anti-parallel
Strand 7	B	264	267	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	228	234	anti-parallel
Strand 3	B	280	285	anti-parallel
Strand 4	B	289	296	anti-parallel
Strand 5	B	299	300	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	41	44	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	124	131	anti-parallel
Strand 5	C	68	76	anti-parallel
Strand 6	C	79	81	anti-parallel
Strand 7	C	328	330	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	D	55	57	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	170	174	parallel
Strand 3	C	289	296	parallel
Strand 4	C	280	285	anti-parallel
Strand 5	C	228	234	anti-parallel
Strand 6	C	237	240	anti-parallel
Strand 7	C	264	267	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	228	234	anti-parallel
Strand 3	C	280	285	anti-parallel
Strand 4	C	289	296	anti-parallel
Strand 5	C	299	300	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	41	44	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	124	131	anti-parallel
Strand 5	D	68	76	anti-parallel
Strand 6	D	79	81	anti-parallel
Strand 7	D	328	330	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	170	174	parallel
Strand 3	D	289	296	parallel
Strand 4	D	280	285	anti-parallel
Strand 5	D	228	234	anti-parallel
Strand 6	D	237	240	anti-parallel
Strand 7	D	264	267	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	228	234	anti-parallel
Strand 3	D	280	285	anti-parallel
Strand 4	D	289	296	anti-parallel
Strand 5	D	299	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBE