Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DBI entry

There are 4 chains in PDB entry 7DBI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	SER 422
B	GLU 4	ILE 420
C	THR 3	SER 422
D	THR 3	ILE 420

There are 88 helices in PDB entry 7DBI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	25	Right-handed 310
Helix 2	AA2	A	63	66	Right-handed 310
Helix 3	AA3	A	67	77	Right-handed alpha
Helix 4	AA4	A	94	101	Right-handed alpha
Helix 5	AA5	A	111	125	Right-handed alpha
Helix 6	AA6	A	126	129	Right-handed 310
Helix 7	AA7	A	140	152	Right-handed alpha
Helix 8	AA8	A	181	189	Right-handed alpha
Helix 9	AA9	A	195	203	Right-handed alpha
Helix 10	AB1	A	203	208	Right-handed alpha
Helix 11	AB2	A	211	222	Right-handed alpha
Helix 12	AB3	A	233	242	Right-handed alpha
Helix 13	AB4	A	257	266	Right-handed alpha
Helix 14	AB5	A	283	288	Right-handed alpha
Helix 15	AB6	A	291	295	Right-handed 310
Helix 16	AB7	A	301	310	Right-handed alpha
Helix 17	AB8	A	311	314	Right-handed 310
Helix 18	AB9	A	329	340	Right-handed alpha
Helix 19	AC1	A	349	353	Right-handed 310
Helix 20	AC2	A	366	371	Right-handed alpha
Helix 21	AC3	A	371	402	Right-handed alpha
Helix 22	AC4	A	411	417	Right-handed alpha
Helix 23	AC5	B	21	25	Right-handed 310
Helix 24	AC6	B	63	66	Right-handed 310
Helix 25	AC7	B	67	77	Right-handed alpha
Helix 26	AC8	B	94	101	Right-handed alpha
Helix 27	AC9	B	111	125	Right-handed alpha
Helix 28	AD1	B	126	129	Right-handed 310
Helix 29	AD2	B	140	152	Right-handed alpha
Helix 30	AD3	B	181	189	Right-handed alpha
Helix 31	AD4	B	195	203	Right-handed alpha
Helix 32	AD5	B	203	208	Right-handed alpha
Helix 33	AD6	B	211	222	Right-handed alpha
Helix 34	AD7	B	233	242	Right-handed alpha
Helix 35	AD8	B	257	266	Right-handed alpha
Helix 36	AD9	B	283	288	Right-handed alpha
Helix 37	AE1	B	291	295	Right-handed 310
Helix 38	AE2	B	301	310	Right-handed alpha
Helix 39	AE3	B	311	314	Right-handed 310
Helix 40	AE4	B	329	340	Right-handed alpha
Helix 41	AE5	B	349	353	Right-handed 310
Helix 42	AE6	B	366	371	Right-handed alpha
Helix 43	AE7	B	371	402	Right-handed alpha
Helix 44	AE8	B	411	417	Right-handed alpha
Helix 45	AE9	C	21	25	Right-handed 310
Helix 46	AF1	C	63	66	Right-handed 310
Helix 47	AF2	C	67	77	Right-handed alpha
Helix 48	AF3	C	94	101	Right-handed alpha
Helix 49	AF4	C	111	125	Right-handed alpha
Helix 50	AF5	C	126	129	Right-handed 310
Helix 51	AF6	C	140	152	Right-handed alpha
Helix 52	AF7	C	181	189	Right-handed alpha
Helix 53	AF8	C	195	203	Right-handed alpha
Helix 54	AF9	C	203	208	Right-handed alpha
Helix 55	AG1	C	211	222	Right-handed alpha
Helix 56	AG2	C	233	242	Right-handed alpha
Helix 57	AG3	C	257	266	Right-handed alpha
Helix 58	AG4	C	283	288	Right-handed alpha
Helix 59	AG5	C	291	295	Right-handed 310
Helix 60	AG6	C	301	310	Right-handed alpha
Helix 61	AG7	C	311	314	Right-handed 310
Helix 62	AG8	C	329	340	Right-handed alpha
Helix 63	AG9	C	349	353	Right-handed 310
Helix 64	AH1	C	366	371	Right-handed alpha
Helix 65	AH2	C	371	402	Right-handed alpha
Helix 66	AH3	C	411	417	Right-handed alpha
Helix 67	AH4	D	21	25	Right-handed 310
Helix 68	AH5	D	63	66	Right-handed 310
Helix 69	AH6	D	67	77	Right-handed alpha
Helix 70	AH7	D	94	101	Right-handed alpha
Helix 71	AH8	D	111	125	Right-handed alpha
Helix 72	AH9	D	126	129	Right-handed 310
Helix 73	AI1	D	140	152	Right-handed alpha
Helix 74	AI2	D	181	189	Right-handed alpha
Helix 75	AI3	D	195	203	Right-handed alpha
Helix 76	AI4	D	203	208	Right-handed alpha
Helix 77	AI5	D	211	222	Right-handed alpha
Helix 78	AI6	D	233	242	Right-handed alpha
Helix 79	AI7	D	257	266	Right-handed alpha
Helix 80	AI8	D	283	288	Right-handed alpha
Helix 81	AI9	D	291	295	Right-handed 310
Helix 82	AJ1	D	301	310	Right-handed alpha
Helix 83	AJ2	D	311	314	Right-handed 310
Helix 84	AJ3	D	329	340	Right-handed alpha
Helix 85	AJ4	D	349	353	Right-handed 310
Helix 86	AJ5	D	366	371	Right-handed alpha
Helix 87	AJ6	D	371	402	Right-handed alpha
Helix 88	AJ7	D	411	417	Right-handed alpha

There are 12 sheets in PDB entry 7DBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	14	first strand
Strand 2	A	33	41	anti-parallel
Strand 3	A	83	89	anti-parallel
Strand 4	A	52	57	parallel
Strand 5	A	133	138	parallel
Strand 6	A	156	162	parallel
Strand 7	A	317	323	parallel
Strand 8	A	355	360	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	223	225	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	299	300	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	14	first strand
Strand 2	B	33	41	anti-parallel
Strand 3	B	83	89	anti-parallel
Strand 4	B	52	57	parallel
Strand 5	B	133	138	parallel
Strand 6	B	156	162	parallel
Strand 7	B	317	323	parallel
Strand 8	B	355	360	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	252	254	anti-parallel
Strand 3	B	223	225	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	299	300	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	14	first strand
Strand 2	C	33	41	anti-parallel
Strand 3	C	83	89	anti-parallel
Strand 4	C	52	57	parallel
Strand 5	C	133	138	parallel
Strand 6	C	156	162	parallel
Strand 7	C	317	323	parallel
Strand 8	C	355	360	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	252	254	anti-parallel
Strand 3	C	223	225	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	299	300	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	14	first strand
Strand 2	D	33	41	anti-parallel
Strand 3	D	83	89	anti-parallel
Strand 4	D	52	57	parallel
Strand 5	D	133	138	parallel
Strand 6	D	156	162	parallel
Strand 7	D	317	323	parallel
Strand 8	D	355	360	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	252	254	anti-parallel
Strand 3	D	223	225	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	299	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DBI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBI