Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DBK entry

There are 4 chains in PDB entry 7DBK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 334
B	ALA 2	LEU 334
C	ALA 2	LEU 334
D	ALA 2	VAL 304

There are121 helices in PDB entry 7DBK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	30	43	Right-handed alpha
Helix 3	AA3	A	55	69	Right-handed alpha
Helix 4	AA4	A	70	73	Right-handed 310
Helix 5	AA5	A	83	88	Right-handed 310
Helix 6	AA6	A	106	129	Right-handed alpha
Helix 7	AA7	A	140	153	Right-handed alpha
Helix 8	AA8	A	155	157	Right-handed 310
Helix 9	AA9	A	164	180	Right-handed alpha
Helix 10	AB1	A	182	186	Right-handed 310
Helix 11	AB2	A	202	204	Right-handed 310
Helix 12	AB3	A	212	216	Right-handed alpha
Helix 13	AB4	A	227	247	Right-handed alpha
Helix 14	AB5	A	250	266	Right-handed alpha
Helix 15	AB6	A	310	329	Right-handed alpha
Helix 16	AB7	B	3	8	Right-handed alpha
Helix 17	AB8	B	30	43	Right-handed alpha
Helix 18	AB9	B	55	69	Right-handed alpha
Helix 19	AC1	B	70	73	Right-handed 310
Helix 20	AC2	B	83	88	Right-handed 310
Helix 21	AC3	B	106	129	Right-handed alpha
Helix 22	AC4	B	140	153	Right-handed alpha
Helix 23	AC5	B	155	157	Right-handed 310
Helix 24	AC6	B	164	180	Right-handed alpha
Helix 25	AC7	B	182	186	Right-handed 310
Helix 26	AC8	B	202	204	Right-handed 310
Helix 27	AC9	B	212	216	Right-handed alpha
Helix 28	AD1	B	227	247	Right-handed alpha
Helix 29	AD2	B	250	266	Right-handed alpha
Helix 30	AD3	B	310	329	Right-handed alpha
Helix 31	AD4	C	3	8	Right-handed alpha
Helix 32	AD5	C	30	43	Right-handed alpha
Helix 33	AD6	C	55	69	Right-handed alpha
Helix 34	AD7	C	70	73	Right-handed 310
Helix 35	AD8	C	83	88	Right-handed 310
Helix 36	AD9	C	106	129	Right-handed alpha
Helix 37	AE1	C	140	153	Right-handed alpha
Helix 38	AE2	C	155	157	Right-handed 310
Helix 39	AE3	C	164	180	Right-handed alpha
Helix 40	AE4	C	182	184	Right-handed 310
Helix 41	AE5	C	202	204	Right-handed 310
Helix 42	AE6	C	212	216	Right-handed alpha
Helix 43	AE7	C	227	247	Right-handed alpha
Helix 44	AE8	C	250	266	Right-handed alpha
Helix 45	AE9	C	310	329	Right-handed alpha
Helix 46	AF1	D	3	8	Right-handed alpha
Helix 47	AF2	D	30	43	Right-handed alpha
Helix 48	AF3	D	55	69	Right-handed alpha
Helix 49	AF4	D	70	73	Right-handed 310
Helix 50	AF5	D	83	88	Right-handed 310
Helix 51	AF6	D	107	129	Right-handed alpha
Helix 52	AF7	D	140	153	Right-handed alpha
Helix 53	AF8	D	155	157	Right-handed 310
Helix 54	AF9	D	164	180	Right-handed alpha
Helix 55	AG1	D	182	186	Right-handed 310
Helix 56	AG2	D	202	204	Right-handed 310
Helix 57	AG3	D	212	216	Right-handed alpha
Helix 58	AG4	D	227	247	Right-handed alpha
Helix 59	AG5	D	250	266	Right-handed alpha
Helix 60	AG6	D	310	329	Right-handed alpha
Helix 61	AG7	E	3	8	Right-handed alpha
Helix 62	AG8	E	30	43	Right-handed alpha
Helix 63	AG9	E	55	69	Right-handed alpha
Helix 64	AH1	E	70	73	Right-handed 310
Helix 65	AH2	E	83	88	Right-handed 310
Helix 66	AH3	E	106	129	Right-handed alpha
Helix 67	AH4	E	140	153	Right-handed alpha
Helix 68	AH5	E	155	157	Right-handed 310
Helix 69	AH6	E	164	180	Right-handed alpha
Helix 70	AH7	E	182	184	Right-handed 310
Helix 71	AH8	E	202	204	Right-handed 310
Helix 72	AH9	E	212	216	Right-handed alpha
Helix 73	AI1	E	227	247	Right-handed alpha
Helix 74	AI2	E	250	266	Right-handed alpha
Helix 75	AI3	E	310	329	Right-handed alpha
Helix 76	AI4	F	3	8	Right-handed alpha
Helix 77	AI5	F	30	43	Right-handed alpha
Helix 78	AI6	F	55	69	Right-handed alpha
Helix 79	AI7	F	70	73	Right-handed 310
Helix 80	AI8	F	83	88	Right-handed 310
Helix 81	AI9	F	106	129	Right-handed alpha
Helix 82	AJ1	F	140	153	Right-handed alpha
Helix 83	AJ2	F	155	157	Right-handed 310
Helix 84	AJ3	F	164	180	Right-handed alpha
Helix 85	AJ4	F	182	186	Right-handed 310
Helix 86	AJ5	F	202	204	Right-handed 310
Helix 87	AJ6	F	212	216	Right-handed alpha
Helix 88	AJ7	F	227	247	Right-handed alpha
Helix 89	AJ8	F	250	266	Right-handed alpha
Helix 90	AJ9	F	310	329	Right-handed alpha
Helix 91	AK1	G	3	8	Right-handed alpha
Helix 92	AK2	G	30	43	Right-handed alpha
Helix 93	AK3	G	55	69	Right-handed alpha
Helix 94	AK4	G	70	73	Right-handed 310
Helix 95	AK5	G	83	88	Right-handed 310
Helix 96	AK6	G	106	129	Right-handed alpha
Helix 97	AK7	G	140	153	Right-handed alpha
Helix 98	AK8	G	155	157	Right-handed 310
Helix 99	AK9	G	164	180	Right-handed alpha
Helix 100	AL1	G	182	186	Right-handed 310
Helix 101	AL2	G	202	204	Right-handed 310
Helix 102	AL3	G	212	216	Right-handed alpha
Helix 103	AL4	G	227	247	Right-handed alpha
Helix 104	AL5	G	250	266	Right-handed alpha
Helix 105	AL6	G	310	329	Right-handed alpha
Helix 106	AL7	H	3	8	Right-handed alpha
Helix 107	AL8	H	30	43	Right-handed alpha
Helix 108	AL9	H	55	69	Right-handed alpha
Helix 109	AM1	H	70	73	Right-handed 310
Helix 110	AM2	H	83	88	Right-handed 310
Helix 111	AM3	H	106	109	Right-handed 310
Helix 112	AM4	H	110	129	Right-handed alpha
Helix 113	AM5	H	140	153	Right-handed alpha
Helix 114	AM6	H	155	157	Right-handed 310
Helix 115	AM7	H	164	180	Right-handed alpha
Helix 116	AM8	H	182	186	Right-handed 310
Helix 117	AM9	H	202	204	Right-handed 310
Helix 118	AN1	H	212	216	Right-handed alpha
Helix 119	AN2	H	227	247	Right-handed alpha
Helix 120	AN3	H	250	266	Right-handed alpha
Helix 121	AN4	H	310	329	Right-handed alpha

There are 32 sheets in PDB entry 7DBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	D	300	305	anti-parallel
Strand 3	D	289	297	anti-parallel
Strand 4	D	270	277	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	48	52	parallel
Strand 3	A	23	27	parallel
Strand 4	A	92	95	parallel
Strand 5	A	133	136	parallel
Strand 6	A	159	161	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	199	200	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	210	211	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	277	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	D	9	11	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	C	300	305	anti-parallel
Strand 3	C	289	297	anti-parallel
Strand 4	C	270	277	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	48	52	parallel
Strand 3	B	23	27	parallel
Strand 4	B	92	95	parallel
Strand 5	B	133	136	parallel
Strand 6	B	159	161	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	199	200	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	210	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	277	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	C	9	11	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	48	52	parallel
Strand 3	C	23	27	parallel
Strand 4	C	92	95	parallel
Strand 5	C	133	136	parallel
Strand 6	C	159	161	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	206	207	anti-parallel
Strand 3	C	210	211	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	199	200	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	48	52	parallel
Strand 3	D	23	27	parallel
Strand 4	D	92	95	parallel
Strand 5	D	133	136	parallel
Strand 6	D	159	161	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	199	200	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	210	211	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	H	300	305	anti-parallel
Strand 3	H	289	297	anti-parallel
Strand 4	H	270	277	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	80	first strand
Strand 2	E	48	52	parallel
Strand 3	E	23	27	parallel
Strand 4	E	92	95	parallel
Strand 5	E	133	136	parallel
Strand 6	E	159	161	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	206	207	anti-parallel
Strand 3	E	210	211	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	191	first strand
Strand 2	E	199	200	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	277	first strand
Strand 2	E	289	297	anti-parallel
Strand 3	E	300	305	anti-parallel
Strand 4	H	9	11	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	G	300	305	anti-parallel
Strand 3	G	289	297	anti-parallel
Strand 4	G	270	277	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	80	first strand
Strand 2	F	48	52	parallel
Strand 3	F	23	27	parallel
Strand 4	F	90	95	parallel
Strand 5	F	133	136	parallel
Strand 6	F	159	161	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	191	first strand
Strand 2	F	199	200	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	207	first strand
Strand 2	F	210	211	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	277	first strand
Strand 2	F	289	297	anti-parallel
Strand 3	F	300	305	anti-parallel
Strand 4	G	9	11	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	80	first strand
Strand 2	G	48	52	parallel
Strand 3	G	23	27	parallel
Strand 4	G	92	95	parallel
Strand 5	G	133	136	parallel
Strand 6	G	159	161	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	190	191	first strand
Strand 2	G	199	200	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	207	first strand
Strand 2	G	210	211	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	80	first strand
Strand 2	H	48	52	parallel
Strand 3	H	23	27	parallel
Strand 4	H	92	95	parallel
Strand 5	H	133	136	parallel
Strand 6	H	159	161	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	190	191	first strand
Strand 2	H	199	200	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	206	207	first strand
Strand 2	H	210	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DBK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBK