Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DBS entry

There is 1 chain in PDB entry 7DBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 5GLU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 7DBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
75 80Right-handed 310
Helix 4
AA4
A
81 98Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
167 176Right-handed alpha
Helix 7
AA7
A
181 194Right-handed alpha
Helix 8
AA8
A
203 214Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7DBS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
34 41parallel
Strand 3
A
59 66anti-parallel
Strand 4
A
143 150anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
124 127anti-parallel
Strand 7
A
117 120anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 239first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
254 257anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il