Analysis of interatomic Contacts of Structural Units in PDB entry:
7DBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DBW entry

There are 3 chains in PDB entry 7DBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1VAL 505
A
 MET 1VAL 505
B
 MET 1VAL 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 7DBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
3 12Right-handed alpha
Helix 2
AA2
C
33 48Right-handed alpha
Helix 3
AA3
C
49 51Right-handed 310
Helix 4
AA4
C
52 56Right-handed alpha
Helix 5
AA5
C
69 71Right-handed 310
Helix 6
AA6
C
75 93Right-handed alpha
Helix 7
AA7
C
101 106Right-handed alpha
Helix 8
AA8
C
109 115Right-handed alpha
Helix 9
AA9
C
116 122Right-handed alpha
Helix 10
AB1
C
132 148Right-handed alpha
Helix 11
AB2
C
196 199Right-handed 310
Helix 12
AB3
C
279 318Right-handed alpha
Helix 13
AB4
C
323 350Right-handed alpha
Helix 14
AB5
C
362 387Right-handed alpha
Helix 15
AB6
C
388 393Right-handed 310
Helix 16
AB7
C
397 403Right-handed alpha
Helix 17
AB8
C
405 414Right-handed alpha
Helix 18
AB9
C
420 436Right-handed alpha
Helix 19
AC1
C
437 450Right-handed alpha
Helix 20
AC2
C
453 464Right-handed alpha
Helix 21
AC3
C
465 468Right-handed 310
Helix 22
AC4
C
471 473Right-handed 310
Helix 23
AC5
C
474 482Right-handed alpha
Helix 24
AC6
C
485 499Right-handed alpha
Helix 25
AC7
A
3 12Right-handed alpha
Helix 26
AC8
A
33 49Right-handed alpha
Helix 27
AC9
A
52 56Right-handed alpha
Helix 28
AD1
A
69 71Right-handed 310
Helix 29
AD2
A
75 93Right-handed alpha
Helix 30
AD3
A
101 106Right-handed alpha
Helix 31
AD4
A
109 115Right-handed alpha
Helix 32
AD5
A
116 122Right-handed alpha
Helix 33
AD6
A
132 148Right-handed alpha
Helix 34
AD7
A
196 199Right-handed 310
Helix 35
AD8
A
279 318Right-handed alpha
Helix 36
AD9
A
323 350Right-handed alpha
Helix 37
AE1
A
362 387Right-handed alpha
Helix 38
AE2
A
388 393Right-handed 310
Helix 39
AE3
A
397 403Right-handed alpha
Helix 40
AE4
A
405 414Right-handed alpha
Helix 41
AE5
A
420 436Right-handed alpha
Helix 42
AE6
A
437 450Right-handed alpha
Helix 43
AE7
A
453 464Right-handed alpha
Helix 44
AE8
A
465 468Right-handed 310
Helix 45
AE9
A
471 473Right-handed 310
Helix 46
AF1
A
474 482Right-handed alpha
Helix 47
AF2
A
485 499Right-handed alpha
Helix 48
AF3
B
3 11Right-handed alpha
Helix 49
AF4
B
33 49Right-handed alpha
Helix 50
AF5
B
52 56Right-handed alpha
Helix 51
AF6
B
69 71Right-handed 310
Helix 52
AF7
B
75 93Right-handed alpha
Helix 53
AF8
B
101 106Right-handed alpha
Helix 54
AF9
B
109 115Right-handed alpha
Helix 55
AG1
B
116 122Right-handed alpha
Helix 56
AG2
B
125 129Right-handed 310
Helix 57
AG3
B
132 148Right-handed alpha
Helix 58
AG4
B
196 199Right-handed 310
Helix 59
AG5
B
277 282Right-handed alpha
Helix 60
AG6
B
283 318Right-handed alpha
Helix 61
AG7
B
323 350Right-handed alpha
Helix 62
AG8
B
362 387Right-handed alpha
Helix 63
AG9
B
388 393Right-handed 310
Helix 64
AH1
B
397 403Right-handed alpha
Helix 65
AH2
B
405 414Right-handed alpha
Helix 66
AH3
B
420 436Right-handed alpha
Helix 67
AH4
B
437 450Right-handed alpha
Helix 68
AH5
B
453 464Right-handed alpha
Helix 69
AH6
B
465 468Right-handed 310
Helix 70
AH7
B
471 473Right-handed 310
Helix 71
AH8
B
474 482Right-handed alpha
Helix 72
AH9
B
485 498Right-handed alpha
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There are 12 sheets in PDB entry 7DBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
C
16 19anti-parallel
Strand 3
C
229 233parallel
Strand 4
C
257 268anti-parallel
Strand 5
C
183 194anti-parallel
Strand 6
C
175 179anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
65 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 154first strand
Strand 2
C
201 204parallel
Strand 3
C
218 223anti-parallel
Strand 4
C
272 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
352 353first strand
Strand 2
C
359 360anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
17 19anti-parallel
Strand 3
A
229 233parallel
Strand 4
A
257 268anti-parallel
Strand 5
A
183 194anti-parallel
Strand 6
A
175 179anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
65 67anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
201 204parallel
Strand 3
A
218 223anti-parallel
Strand 4
A
272 275anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
359 360anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
16 19anti-parallel
Strand 3
B
229 233parallel
Strand 4
B
257 268anti-parallel
Strand 5
B
183 194anti-parallel
Strand 6
B
175 179anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
65 67anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
201 204parallel
Strand 3
B
218 223anti-parallel
Strand 4
B
272 275anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
359 360anti-parallel
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