Analysis of interatomic Contacts of Structural Units in PDB entry:
7DC3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DC3 entry

There are 3 chains in PDB entry 7DC3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 559	LYS 705
B	ASP 568	LYS 705
C	THR 564	LYS 705

There are 15 helices in PDB entry 7DC3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	588	592	Right-handed 310
Helix 2	AA2	A	599	610	Right-handed alpha
Helix 3	AA3	A	618	625	Right-handed alpha
Helix 4	AA4	A	637	645	Right-handed alpha
Helix 5	AA5	A	670	705	Right-handed alpha
Helix 6	AA6	B	588	592	Right-handed 310
Helix 7	AA7	B	599	610	Right-handed alpha
Helix 8	AA8	B	618	626	Right-handed alpha
Helix 9	AA9	B	637	645	Right-handed alpha
Helix 10	AB1	B	670	704	Right-handed alpha
Helix 11	AB2	C	588	592	Right-handed 310
Helix 12	AB3	C	599	610	Right-handed alpha
Helix 13	AB4	C	618	625	Right-handed alpha
Helix 14	AB5	C	637	645	Right-handed alpha
Helix 15	AB6	C	670	705	Right-handed alpha

There are 10 sheets in PDB entry 7DC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	573	first strand
Strand 2	A	560	562	parallel
Strand 3	B	571	573	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	615	first strand
Strand 2	A	633	636	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	651	first strand
Strand 2	A	667	669	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	656	first strand
Strand 2	A	662	663	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	615	first strand
Strand 2	B	633	635	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	651	first strand
Strand 2	B	667	669	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	656	first strand
Strand 2	B	662	663	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	615	first strand
Strand 2	C	633	636	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	651	first strand
Strand 2	C	667	669	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	655	656	first strand
Strand 2	C	662	663	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DC3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DC3