Analysis of interatomic Contacts of Structural Units in PDB entry:
7DCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DCP entry

There are 2 chains in PDB entry 7DCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
x
 ARG 12ILE 867
y
 LYS 69LYS 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7DCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
x
12 16Right-handed 310
Helix 2
AA2
x
216 222Right-handed alpha
Helix 3
AA3
x
228 239Right-handed alpha
Helix 4
AA4
x
251 264Right-handed alpha
Helix 5
AA5
x
279 295Right-handed alpha
Helix 6
AA6
x
324 334Right-handed alpha
Helix 7
AA7
x
348 351Right-handed 310
Helix 8
AA8
x
352 369Right-handed alpha
Helix 9
AA9
x
383 390Right-handed alpha
Helix 10
AB1
x
416 432Right-handed alpha
Helix 11
AB2
x
444 463Right-handed alpha
Helix 12
AB3
x
479 484Right-handed alpha
Helix 13
AB4
x
502 507Right-handed alpha
Helix 14
AB5
x
542 551Right-handed alpha
Helix 15
AB6
x
552 555Right-handed 310
Helix 16
AB7
x
567 572Right-handed alpha
Helix 17
AB8
x
580 584Right-handed 310
Helix 18
AB9
x
587 598Right-handed alpha
Helix 19
AC1
x
612 626Right-handed alpha
Helix 20
AC2
x
636 643Right-handed alpha
Helix 21
AC3
x
648 661Right-handed alpha
Helix 22
AC4
x
667 680Right-handed alpha
Helix 23
AC5
x
681 684Right-handed 310
Helix 24
AC6
x
688 697Right-handed alpha
Helix 25
AC7
x
702 717Right-handed alpha
Helix 26
AC8
x
720 728Right-handed alpha
Helix 27
AC9
x
730 752Right-handed alpha
Helix 28
AD1
x
752 765Right-handed alpha
Helix 29
AD2
x
767 783Right-handed alpha
Helix 30
AD3
x
813 822Right-handed alpha
Helix 31
AD4
x
852 859Right-handed alpha
Helix 32
AD5
x
859 867Right-handed alpha
Helix 33
AD6
y
95 100Right-handed alpha
Helix 34
AD7
y
101 114Right-handed alpha
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There are 5 sheets in PDB entry 7DCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
171 172first strand
Strand 2
y
166 167parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
310 311first strand
Strand 2
x
302 305anti-parallel
Strand 3
x
319 323parallel
Strand 4
x
272 277parallel
Strand 5
x
340 346parallel
Strand 6
x
373 378parallel
Strand 7
x
241 246parallel
Strand 8
x
395 398parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
405 408first strand
Strand 2
x
559 563parallel
Strand 3
x
513 518parallel
Strand 4
x
437 441parallel
Strand 5
x
494 500parallel
Strand 6
x
468 474parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
521 528first strand
Strand 2
x
533 540anti-parallel
Strand 3
x
834 837parallel
Strand 4
x
841 844anti-parallel
Strand 5
x
808 809parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
795 797first strand
Strand 2
x
787 790anti-parallel
Strand 3
x
829 831anti-parallel
Strand 4
x
847 849anti-parallel
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