Analysis of interatomic Contacts of Structural Units in PDB entry:
7DCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DCR entry

There are 2 chains in PDB entry 7DCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
x
 THR 215ILE 867
y
 LYS 69LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7DCR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
x
228 237Right-handed alpha
Helix 2
AA2
x
255 264Right-handed alpha
Helix 3
AA3
x
279 295Right-handed alpha
Helix 4
AA4
x
323 329Right-handed alpha
Helix 5
AA5
x
330 332Right-handed 310
Helix 6
AA6
x
347 351Right-handed 310
Helix 7
AA7
x
352 357Right-handed alpha
Helix 8
AA8
x
357 365Right-handed alpha
Helix 9
AA9
x
382 390Right-handed alpha
Helix 10
AB1
x
418 431Right-handed alpha
Helix 11
AB2
x
444 463Right-handed alpha
Helix 12
AB3
x
479 488Right-handed alpha
Helix 13
AB4
x
542 551Right-handed alpha
Helix 14
AB5
x
566 573Right-handed alpha
Helix 15
AB6
x
587 597Right-handed alpha
Helix 16
AB7
x
612 626Right-handed alpha
Helix 17
AB8
x
636 643Right-handed alpha
Helix 18
AB9
x
650 661Right-handed alpha
Helix 19
AC1
x
667 679Right-handed alpha
Helix 20
AC2
x
688 697Right-handed alpha
Helix 21
AC3
x
702 717Right-handed alpha
Helix 22
AC4
x
720 727Right-handed alpha
Helix 23
AC5
x
730 752Right-handed alpha
Helix 24
AC6
x
754 764Right-handed alpha
Helix 25
AC7
x
767 781Right-handed alpha
Helix 26
AC8
x
813 821Right-handed alpha
Helix 27
AC9
x
852 857Right-handed alpha
Helix 28
AD1
x
859 867Right-handed alpha
Helix 29
AD2
y
95 100Right-handed alpha
Helix 30
AD3
y
101 111Right-handed alpha
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There are 4 sheets in PDB entry 7DCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
310 311first strand
Strand 2
x
302 305anti-parallel
Strand 3
x
319 322parallel
Strand 4
x
272 276parallel
Strand 5
x
340 345parallel
Strand 6
x
373 378parallel
Strand 7
x
241 245parallel
Strand 8
x
395 397parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
406 409first strand
Strand 2
x
560 563parallel
Strand 3
x
513 518parallel
Strand 4
x
437 441parallel
Strand 5
x
494 500parallel
Strand 6
x
468 473parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
521 527first strand
Strand 2
x
534 540anti-parallel
Strand 3
x
834 837parallel
Strand 4
x
841 844anti-parallel
Strand 5
x
808 809parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
795 797first strand
Strand 2
x
787 790anti-parallel
Strand 3
x
829 831anti-parallel
Strand 4
x
848 849anti-parallel
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