Analysis of interatomic Contacts of Structural Units in PDB entry:
7DD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DD3 entry

There are 3 chains in PDB entry 7DD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
x
 THR 215ILE 867
y
 SER 2LYS 151
G
 U 528 U 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7DD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
x
215 221Right-handed alpha
Helix 2
AA2
x
223 227Right-handed 310
Helix 3
AA3
x
228 239Right-handed alpha
Helix 4
AA4
x
254 264Right-handed alpha
Helix 5
AA5
x
279 294Right-handed alpha
Helix 6
AA6
x
323 334Right-handed alpha
Helix 7
AA7
x
352 369Right-handed alpha
Helix 8
AA8
x
382 390Right-handed alpha
Helix 9
AA9
x
416 432Right-handed alpha
Helix 10
AB1
x
445 462Right-handed alpha
Helix 11
AB2
x
479 484Right-handed alpha
Helix 12
AB3
x
542 551Right-handed alpha
Helix 13
AB4
x
566 573Right-handed alpha
Helix 14
AB5
x
580 585Right-handed alpha
Helix 15
AB6
x
589 597Right-handed alpha
Helix 16
AB7
x
612 626Right-handed alpha
Helix 17
AB8
x
636 645Right-handed alpha
Helix 18
AB9
x
650 658Right-handed alpha
Helix 19
AC1
x
667 679Right-handed alpha
Helix 20
AC2
x
688 697Right-handed alpha
Helix 21
AC3
x
704 716Right-handed alpha
Helix 22
AC4
x
721 727Right-handed alpha
Helix 23
AC5
x
730 751Right-handed alpha
Helix 24
AC6
x
752 763Right-handed alpha
Helix 25
AC7
x
770 783Right-handed alpha
Helix 26
AC8
x
813 821Right-handed alpha
Helix 27
AC9
x
852 859Right-handed alpha
Helix 28
AD1
x
859 867Right-handed alpha
Helix 29
AD2
y
9 14Right-handed alpha
Helix 30
AD3
y
93 100Right-handed alpha
Helix 31
AD4
y
101 112Right-handed alpha
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There are 5 sheets in PDB entry 7DD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
310 311first strand
Strand 2
x
302 305anti-parallel
Strand 3
x
319 320parallel
Strand 4
x
272 276parallel
Strand 5
x
340 345parallel
Strand 6
x
373 378parallel
Strand 7
x
241 246parallel
Strand 8
x
395 398parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
406 409first strand
Strand 2
x
560 563parallel
Strand 3
x
513 518parallel
Strand 4
x
437 441parallel
Strand 5
x
494 500parallel
Strand 6
x
468 474parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
521 528first strand
Strand 2
x
533 540anti-parallel
Strand 3
x
836 837parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
795 797first strand
Strand 2
x
787 790anti-parallel
Strand 3
x
829 831anti-parallel
Strand 4
x
847 849anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
x
808 809first strand
Strand 2
x
842 843parallel
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