Analysis of interatomic Contacts of Structural Units in PDB entry:
7DD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DD5 entry

There are 2 chains in PDB entry 7DD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 20	THR 867
B	PRO 22	THR 867

There are 53 helices in PDB entry 7DD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	84	Right-handed alpha
Helix 2	AA2	A	103	115	Right-handed alpha
Helix 3	AA3	A	147	158	Right-handed alpha
Helix 4	AA4	A	159	161	Right-handed 310
Helix 5	AA5	A	171	176	Right-handed 310
Helix 6	AA6	A	190	204	Right-handed alpha
Helix 7	AA7	A	218	233	Right-handed alpha
Helix 8	AA8	A	248	261	Right-handed alpha
Helix 9	AA9	A	272	287	Right-handed alpha
Helix 10	AB1	A	307	315	Right-handed alpha
Helix 11	AB2	A	330	335	Right-handed alpha
Helix 12	AB3	A	347	357	Right-handed alpha
Helix 13	AB4	A	399	403	Right-handed 310
Helix 14	AB5	A	414	435	Right-handed alpha
Helix 15	AB6	A	443	447	Right-handed 310
Helix 16	AB7	A	455	465	Right-handed alpha
Helix 17	AB8	A	528	532	Right-handed 310
Helix 18	AB9	A	609	636	Right-handed alpha
Helix 19	AC1	A	639	644	Right-handed alpha
Helix 20	AC2	A	646	663	Right-handed alpha
Helix 21	AC3	A	664	668	Right-handed 310
Helix 22	AC4	A	672	697	Right-handed alpha
Helix 23	AC5	A	700	706	Right-handed alpha
Helix 24	AC6	A	712	717	Right-handed alpha
Helix 25	AC7	A	720	743	Right-handed alpha
Helix 26	AC8	A	768	793	Right-handed alpha
Helix 27	AC9	A	801	825	Right-handed alpha
Helix 28	AD1	A	828	861	Right-handed alpha
Helix 29	AD2	B	64	84	Right-handed alpha
Helix 30	AD3	B	103	115	Right-handed alpha
Helix 31	AD4	B	115	120	Right-handed alpha
Helix 32	AD5	B	146	158	Right-handed alpha
Helix 33	AD6	B	171	176	Right-handed 310
Helix 34	AD7	B	190	204	Right-handed alpha
Helix 35	AD8	B	218	233	Right-handed alpha
Helix 36	AD9	B	248	261	Right-handed alpha
Helix 37	AE1	B	272	287	Right-handed alpha
Helix 38	AE2	B	296	301	Right-handed alpha
Helix 39	AE3	B	309	313	Right-handed 310
Helix 40	AE4	B	329	335	Right-handed alpha
Helix 41	AE5	B	347	357	Right-handed alpha
Helix 42	AE6	B	415	435	Right-handed alpha
Helix 43	AE7	B	455	465	Right-handed alpha
Helix 44	AE8	B	609	636	Right-handed alpha
Helix 45	AE9	B	646	664	Right-handed alpha
Helix 46	AF1	B	665	668	Right-handed 310
Helix 47	AF2	B	672	697	Right-handed alpha
Helix 48	AF3	B	700	706	Right-handed alpha
Helix 49	AF4	B	712	716	Right-handed alpha
Helix 50	AF5	B	720	744	Right-handed alpha
Helix 51	AF6	B	768	793	Right-handed alpha
Helix 52	AF7	B	801	825	Right-handed alpha
Helix 53	AF8	B	828	862	Right-handed alpha

There are 18 sheets in PDB entry 7DD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	34	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	37	38	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	164	166	parallel
Strand 3	A	183	185	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	295	parallel
Strand 5	A	317	321	parallel
Strand 6	A	488	495	anti-parallel
Strand 7	A	502	510	anti-parallel
Strand 8	A	520	522	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	474	477	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	562	566	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	572	first strand
Strand 2	A	582	583	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	597	599	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	603	first strand
Strand 2	A	759	765	parallel
Strand 3	A	748	752	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	143	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	183	185	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	294	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	488	495	anti-parallel
Strand 3	B	502	510	anti-parallel
Strand 4	B	520	522	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	469	first strand
Strand 2	B	475	477	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	552	first strand
Strand 2	B	563	566	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	572	first strand
Strand 2	B	582	583	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	589	first strand
Strand 2	B	598	599	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	752	first strand
Strand 2	B	761	765	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DD5