Analysis of interatomic Contacts of Structural Units in PDB entry:
7DD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DD8 entry

There are 5 chains in PDB entry 7DD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2GLY 222
B
ASP 1GLU 213
C
GLN 14SER 1147
D
GLN 14SER 1147
E
GLN 14SER 1147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7DD8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
86 90Right-handed 310
Helix 2
AA2
B
79 83Right-handed 310
Helix 3
AA3
B
121 128Right-handed alpha
Helix 4
AA4
B
183 187Right-handed alpha
Helix 5
AA5
C
294 304Right-handed alpha
Helix 6
AA6
C
338 343Right-handed alpha
Helix 7
AA7
C
737 744Right-handed alpha
Helix 8
AA8
C
748 754Right-handed alpha
Helix 9
AA9
C
758 783Right-handed alpha
Helix 10
AB1
C
816 823Right-handed alpha
Helix 11
AB2
C
866 884Right-handed alpha
Helix 12
AB3
C
897 908Right-handed alpha
Helix 13
AB4
C
913 919Right-handed alpha
Helix 14
AB5
C
919 939Right-handed alpha
Helix 15
AB6
C
945 964Right-handed alpha
Helix 16
AB7
C
965 968Right-handed 310
Helix 17
AB8
C
976 984Right-handed alpha
Helix 18
AB9
C
988 1032Right-handed alpha
Helix 19
AC1
C
1140 1147Right-handed alpha
Helix 20
AC2
D
294 304Right-handed alpha
Helix 21
AC3
D
403 407Right-handed 310
Helix 22
AC4
D
748 754Right-handed alpha
Helix 23
AC5
D
755 757Right-handed 310
Helix 24
AC6
D
758 780Right-handed alpha
Helix 25
AC7
D
816 825Right-handed alpha
Helix 26
AC8
D
866 883Right-handed alpha
Helix 27
AC9
D
897 905Right-handed alpha
Helix 28
AD1
D
913 919Right-handed alpha
Helix 29
AD2
D
919 939Right-handed alpha
Helix 30
AD3
D
941 944Right-handed 310
Helix 31
AD4
D
945 957Right-handed alpha
Helix 32
AD5
D
957 962Right-handed alpha
Helix 33
AD6
D
963 968Right-handed 310
Helix 34
AD7
D
976 981Right-handed alpha
Helix 35
AD8
D
988 1031Right-handed alpha
Helix 36
AD9
D
1140 1146Right-handed alpha
Helix 37
AE1
E
294 304Right-handed alpha
Helix 38
AE2
E
403 407Right-handed 310
Helix 39
AE3
E
747 754Right-handed alpha
Helix 40
AE4
E
755 757Right-handed 310
Helix 41
AE5
E
758 780Right-handed alpha
Helix 42
AE6
E
816 825Right-handed alpha
Helix 43
AE7
E
866 883Right-handed alpha
Helix 44
AE8
E
897 905Right-handed alpha
Helix 45
AE9
E
913 919Right-handed alpha
Helix 46
AF1
E
919 940Right-handed alpha
Helix 47
AF2
E
941 944Right-handed 310
Helix 48
AF3
E
945 964Right-handed alpha
Helix 49
AF4
E
965 968Right-handed 310
Helix 50
AF5
E
977 984Right-handed alpha
Helix 51
AF6
E
988 1031Right-handed alpha
Helix 52
AF7
E
1140 1146Right-handed alpha
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There are 61 sheets in PDB entry 7DD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 7first strand
Strand 2
A
21 25anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 51first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
91 100anti-parallel
Strand 4
A
105 108anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 51first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
91 100anti-parallel
Strand 4
A
113 115anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 69first strand
Strand 2
A
80 82anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 130first strand
Strand 2
A
141 149anti-parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
170 171anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 130first strand
Strand 2
A
141 149anti-parallel
Strand 3
A
181 183anti-parallel
Strand 4
A
175 176anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
157 160first strand
Strand 2
A
200 205anti-parallel
Strand 3
A
210 215anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 21first strand
Strand 2
B
70 75anti-parallel
Strand 3
B
65 67anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
45 46first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
88 89anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 49first strand
Strand 2
B
53 54anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 117first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
159 163anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
153 154first strand
Strand 2
B
146 150anti-parallel
Strand 3
B
192 196anti-parallel
Strand 4
B
205 209anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 30first strand
Strand 2
C
61 62anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 50first strand
Strand 2
C
276 279anti-parallel
Strand 3
C
285 287anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
53 55first strand
Strand 2
C
271 273anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
65 66first strand
Strand 2
C
264 269anti-parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
188 197anti-parallel
Strand 5
C
200 207anti-parallel
Strand 6
C
224 229anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
84 85first strand
Strand 2
C
237 240anti-parallel
Strand 3
C
104 107anti-parallel
Strand 4
C
117 121anti-parallel
Strand 5
C
126 133anti-parallel
Strand 6
C
163 170anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
141 142first strand
Strand 2
C
243 244parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
313 319first strand
Strand 2
C
592 598anti-parallel
Strand 3
C
609 613anti-parallel
Strand 4
C
648 651anti-parallel
Strand 5
C
642 644anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
325 327first strand
Strand 2
C
538 542parallel
Strand 3
C
547 553anti-parallel
Strand 4
C
585 588anti-parallel
Strand 5
C
575 576anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
355 357first strand
Strand 2
C
394 402anti-parallel
Strand 3
C
508 516anti-parallel
Strand 4
C
432 435anti-parallel
Strand 5
C
376 379anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
473 474first strand
Strand 2
C
488 489anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
654 655first strand
Strand 2
C
691 696parallel
Strand 3
C
670 675anti-parallel
Strand 4
C
664 667anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
701 703first strand
Strand 2
E
787 789parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
718 728first strand
Strand 2
C
1059 1069anti-parallel
Strand 3
C
1047 1056anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
734 736first strand
Strand 2
C
858 860anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
787 789first strand
Strand 2
D
701 703parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1076 1078first strand
Strand 2
C
1094 1097anti-parallel
Strand 3
C
1102 1105anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1081 1082first strand
Strand 2
C
1087 1090anti-parallel
Strand 3
C
1120 1122anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 30first strand
Strand 2
D
61 62anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 55first strand
Strand 2
D
271 278anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
65 68first strand
Strand 2
D
262 269anti-parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
188 196anti-parallel
Strand 5
D
206 208anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
65 68first strand
Strand 2
D
262 269anti-parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
188 196anti-parallel
Strand 5
D
201 202anti-parallel
Strand 6
D
228 229anti-parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
84 85first strand
Strand 2
D
237 240anti-parallel
Strand 3
D
104 107anti-parallel
Strand 4
D
117 121anti-parallel
Strand 5
D
126 135anti-parallel
Strand 6
D
160 170anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
141 143first strand
Strand 2
D
243 245parallel
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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
311 318first strand
Strand 2
D
593 599anti-parallel
Strand 3
D
609 611anti-parallel
Strand 4
D
649 651anti-parallel
Strand 5
D
642 644anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
398 402first strand
Strand 2
D
508 513anti-parallel
Strand 3
D
432 434anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
452 454first strand
Strand 2
D
492 494anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
538 543first strand
Strand 2
D
546 553anti-parallel
Strand 3
D
585 588anti-parallel
Strand 4
D
573 576anti-parallel
Strand 5
D
566 567anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
654 655first strand
Strand 2
D
691 696parallel
Strand 3
D
670 675anti-parallel
Strand 4
D
664 667anti-parallel
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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
711 713first strand
Strand 2
D
1074 1078anti-parallel
Strand 3
D
1094 1097anti-parallel
Strand 4
D
1102 1105anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
717 723first strand
Strand 2
D
1064 1071anti-parallel
Strand 3
D
1047 1051anti-parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
726 728first strand
Strand 2
D
1059 1061anti-parallel
Strand 3
D
1054 1056anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
734 736first strand
Strand 2
D
858 860anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
787 789first strand
Strand 2
E
701 703parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
29 30first strand
Strand 2
E
61 62anti-parallel
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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
48 52first strand
Strand 2
E
274 279anti-parallel
Strand 3
E
285 290anti-parallel
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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
65 68first strand
Strand 2
E
262 269anti-parallel
Strand 3
E
90 96anti-parallel
Strand 4
E
188 196anti-parallel
Strand 5
E
201 208anti-parallel
Strand 6
E
224 229anti-parallel
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There are 6 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
84 85first strand
Strand 2
E
237 240anti-parallel
Strand 3
E
104 107anti-parallel
Strand 4
E
117 121anti-parallel
Strand 5
E
126 135anti-parallel
Strand 6
E
160 170anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
141 143first strand
Strand 2
E
243 245parallel
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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
311 318first strand
Strand 2
E
593 599anti-parallel
Strand 3
E
609 612anti-parallel
Strand 4
E
649 651anti-parallel
Strand 5
E
642 644anti-parallel
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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
398 402first strand
Strand 2
E
508 513anti-parallel
Strand 3
E
432 437anti-parallel
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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
538 543first strand
Strand 2
E
546 553anti-parallel
Strand 3
E
585 588anti-parallel
Strand 4
E
573 576anti-parallel
Strand 5
E
565 567anti-parallel
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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
654 655first strand
Strand 2
E
691 696parallel
Strand 3
E
670 675anti-parallel
Strand 4
E
664 665anti-parallel
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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
711 713first strand
Strand 2
E
1074 1078anti-parallel
Strand 3
E
1094 1097anti-parallel
Strand 4
E
1102 1105anti-parallel
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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
717 723first strand
Strand 2
E
1064 1071anti-parallel
Strand 3
E
1047 1051anti-parallel
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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
726 728first strand
Strand 2
E
1059 1061anti-parallel
Strand 3
E
1054 1056anti-parallel
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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
734 736first strand
Strand 2
E
858 860anti-parallel
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There are 3 strands in AG7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
1081 1082first strand
Strand 2
E
1087 1090anti-parallel
Strand 3
E
1120 1122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il