Analysis of interatomic Contacts of Structural Units in PDB entry:
7DDD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DDD entry

There are 3 chains in PDB entry 7DDD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	SER 1147
B	GLN 14	SER 1147
C	GLN 14	SER 1147

There are 69 helices in PDB entry 7DDD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	337	342	Right-handed alpha
Helix 3	AA3	A	366	370	Right-handed 310
Helix 4	AA4	A	383	387	Right-handed 310
Helix 5	AA5	A	405	407	Right-handed 310
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	502	505	Right-handed 310
Helix 8	AA8	A	737	743	Right-handed alpha
Helix 9	AA9	A	746	754	Right-handed alpha
Helix 10	AB1	A	755	757	Right-handed 310
Helix 11	AB2	A	758	783	Right-handed alpha
Helix 12	AB3	A	816	825	Right-handed alpha
Helix 13	AB4	A	836	842	Right-handed alpha
Helix 14	AB5	A	848	855	Right-handed alpha
Helix 15	AB6	A	866	885	Right-handed alpha
Helix 16	AB7	A	897	910	Right-handed alpha
Helix 17	AB8	A	913	919	Right-handed alpha
Helix 18	AB9	A	919	939	Right-handed alpha
Helix 19	AC1	A	945	965	Right-handed alpha
Helix 20	AC2	A	966	968	Right-handed 310
Helix 21	AC3	A	976	984	Right-handed alpha
Helix 22	AC4	A	985	1031	Right-handed alpha
Helix 23	AC5	A	1141	1145	Right-handed 310
Helix 24	AC6	B	294	304	Right-handed alpha
Helix 25	AC7	B	337	342	Right-handed alpha
Helix 26	AC8	B	366	370	Right-handed 310
Helix 27	AC9	B	383	387	Right-handed 310
Helix 28	AD1	B	405	407	Right-handed 310
Helix 29	AD2	B	438	443	Right-handed alpha
Helix 30	AD3	B	502	505	Right-handed 310
Helix 31	AD4	B	737	743	Right-handed alpha
Helix 32	AD5	B	746	754	Right-handed alpha
Helix 33	AD6	B	755	757	Right-handed 310
Helix 34	AD7	B	758	783	Right-handed alpha
Helix 35	AD8	B	816	825	Right-handed alpha
Helix 36	AD9	B	836	842	Right-handed alpha
Helix 37	AE1	B	848	855	Right-handed alpha
Helix 38	AE2	B	866	885	Right-handed alpha
Helix 39	AE3	B	897	910	Right-handed alpha
Helix 40	AE4	B	913	919	Right-handed alpha
Helix 41	AE5	B	919	939	Right-handed alpha
Helix 42	AE6	B	945	965	Right-handed alpha
Helix 43	AE7	B	966	968	Right-handed 310
Helix 44	AE8	B	976	984	Right-handed alpha
Helix 45	AE9	B	985	1031	Right-handed alpha
Helix 46	AF1	B	1141	1145	Right-handed 310
Helix 47	AF2	C	294	304	Right-handed alpha
Helix 48	AF3	C	337	342	Right-handed alpha
Helix 49	AF4	C	366	370	Right-handed 310
Helix 50	AF5	C	383	387	Right-handed 310
Helix 51	AF6	C	405	407	Right-handed 310
Helix 52	AF7	C	438	443	Right-handed alpha
Helix 53	AF8	C	502	505	Right-handed 310
Helix 54	AF9	C	737	743	Right-handed alpha
Helix 55	AG1	C	746	754	Right-handed alpha
Helix 56	AG2	C	755	757	Right-handed 310
Helix 57	AG3	C	758	783	Right-handed alpha
Helix 58	AG4	C	816	825	Right-handed alpha
Helix 59	AG5	C	836	842	Right-handed alpha
Helix 60	AG6	C	848	855	Right-handed alpha
Helix 61	AG7	C	866	885	Right-handed alpha
Helix 62	AG8	C	897	910	Right-handed alpha
Helix 63	AG9	C	913	919	Right-handed alpha
Helix 64	AH1	C	919	939	Right-handed alpha
Helix 65	AH2	C	945	965	Right-handed alpha
Helix 66	AH3	C	966	968	Right-handed 310
Helix 67	AH4	C	976	984	Right-handed alpha
Helix 68	AH5	C	985	1031	Right-handed alpha
Helix 69	AH6	C	1141	1145	Right-handed 310

There are 51 sheets in PDB entry 7DDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	61	62	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	263	269	anti-parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	188	197	anti-parallel
Strand 5	A	205	208	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	263	269	anti-parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	188	197	anti-parallel
Strand 5	A	200	202	anti-parallel
Strand 6	A	228	229	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	104	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	135	anti-parallel
Strand 6	A	160	171	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	243	245	parallel
Strand 3	A	259	260	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	374	379	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	543	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	573	577	anti-parallel
Strand 5	A	565	567	anti-parallel
Strand 6	B	42	44	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	598	first strand
Strand 2	A	609	613	anti-parallel
Strand 3	A	648	651	anti-parallel
Strand 4	A	642	644	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	B	787	790	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	790	first strand
Strand 2	C	701	704	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	61	62	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	263	269	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	188	197	anti-parallel
Strand 5	B	205	208	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	263	269	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	188	197	anti-parallel
Strand 5	B	200	202	anti-parallel
Strand 6	B	228	229	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	135	anti-parallel
Strand 6	B	160	171	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	242	245	parallel
Strand 3	B	259	260	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	507	514	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	374	379	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	543	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	573	577	anti-parallel
Strand 5	B	565	567	anti-parallel
Strand 6	C	42	44	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	598	first strand
Strand 2	B	609	613	anti-parallel
Strand 3	B	648	651	anti-parallel
Strand 4	B	642	644	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	704	first strand
Strand 2	C	787	790	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	61	62	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	263	269	anti-parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	188	197	anti-parallel
Strand 5	C	205	208	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	263	269	anti-parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	188	197	anti-parallel
Strand 5	C	200	202	anti-parallel
Strand 6	C	228	229	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	142	anti-parallel
Strand 6	C	158	171	anti-parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	142	anti-parallel
Strand 6	C	242	245	parallel
Strand 7	C	259	260	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	514	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	374	379	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	598	first strand
Strand 2	C	609	613	anti-parallel
Strand 3	C	648	651	anti-parallel
Strand 4	C	642	644	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1077	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DDD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DDD