Analysis of interatomic Contacts of Structural Units in PDB entry:
7DDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DDZ entry

There is 1 chain in PDB entry 7DDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 48GLU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7DDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 78Right-handed alpha
Helix 2
AA2
A
83 101Right-handed alpha
Helix 3
AA3
A
102 113Right-handed alpha
Helix 4
AA4
A
119 154Right-handed alpha
Helix 5
AA5
A
163 180Right-handed alpha
Helix 6
AA6
A
181 186Right-handed alpha
Helix 7
AA7
A
213 227Right-handed alpha
Helix 8
AA8
A
228 248Right-handed alpha
Helix 9
AA9
A
1011 1027Right-handed alpha
Helix 10
AB1
A
1037 1039Right-handed 310
Helix 11
AB2
A
1069 1075Right-handed alpha
Helix 12
AB3
A
1076 1079Right-handed 310
Helix 13
AB4
A
1100 1113Right-handed alpha
Helix 14
AB5
A
1127 1130Right-handed 310
Helix 15
AB6
A
1131 291Right-handed alpha
Helix 16
AB7
A
299 329Right-handed alpha
Helix 17
AB8
A
329 340Right-handed alpha
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There are 4 sheets in PDB entry 7DDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
201 205anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1035first strand
Strand 2
A
1001 1007parallel
Strand 3
A
1050 1055parallel
Strand 4
A
1085 1092parallel
Strand 5
A
1116 1117parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1035first strand
Strand 2
A
1001 1007parallel
Strand 3
A
1050 1055parallel
Strand 4
A
1085 1092parallel
Strand 5
A
1122 1125parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1058first strand
Strand 2
A
1064 1065anti-parallel
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