Analysis of interatomic Contacts of Structural Units in PDB entry:
7DE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DE0 entry

There are 4 chains in PDB entry 7DE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 10	SER 293
A	LYS 10	PRO 294
C	PRO 11	SER 293
D	LYS 10	PRO 294

There are 46 helices in PDB entry 7DE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	21	32	Right-handed alpha
Helix 2	AA2	B	42	59	Right-handed alpha
Helix 3	AA3	B	81	85	Right-handed 310
Helix 4	AA4	B	86	92	Right-handed alpha
Helix 5	AA5	B	96	107	Right-handed alpha
Helix 6	AA6	B	139	145	Right-handed 310
Helix 7	AA7	B	175	179	Right-handed 310
Helix 8	AA8	B	186	190	Right-handed 310
Helix 9	AA9	B	244	250	Right-handed alpha
Helix 10	AB1	B	252	259	Right-handed alpha
Helix 11	AB2	B	282	286	Right-handed alpha
Helix 12	AB3	A	21	32	Right-handed alpha
Helix 13	AB4	A	42	59	Right-handed alpha
Helix 14	AB5	A	81	85	Right-handed 310
Helix 15	AB6	A	86	92	Right-handed alpha
Helix 16	AB7	A	96	107	Right-handed alpha
Helix 17	AB8	A	139	145	Right-handed 310
Helix 18	AB9	A	186	190	Right-handed 310
Helix 19	AC1	A	244	250	Right-handed alpha
Helix 20	AC2	A	252	259	Right-handed alpha
Helix 21	AC3	A	282	287	Right-handed alpha
Helix 22	AC4	C	21	32	Right-handed alpha
Helix 23	AC5	C	42	59	Right-handed alpha
Helix 24	AC6	C	68	72	Right-handed 310
Helix 25	AC7	C	81	85	Right-handed 310
Helix 26	AC8	C	86	92	Right-handed alpha
Helix 27	AC9	C	93	95	Right-handed 310
Helix 28	AD1	C	96	107	Right-handed alpha
Helix 29	AD2	C	139	145	Right-handed 310
Helix 30	AD3	C	175	179	Right-handed 310
Helix 31	AD4	C	186	190	Right-handed 310
Helix 32	AD5	C	244	250	Right-handed alpha
Helix 33	AD6	C	252	259	Right-handed alpha
Helix 34	AD7	C	282	286	Right-handed alpha
Helix 35	AD8	D	21	32	Right-handed alpha
Helix 36	AD9	D	42	59	Right-handed alpha
Helix 37	AE1	D	68	72	Right-handed 310
Helix 38	AE2	D	81	85	Right-handed 310
Helix 39	AE3	D	86	92	Right-handed alpha
Helix 40	AE4	D	96	107	Right-handed alpha
Helix 41	AE5	D	139	145	Right-handed 310
Helix 42	AE6	D	175	179	Right-handed 310
Helix 43	AE7	D	186	190	Right-handed 310
Helix 44	AE8	D	244	249	Right-handed alpha
Helix 45	AE9	D	252	259	Right-handed alpha
Helix 46	AF1	D	282	287	Right-handed alpha

There are 12 sheets in PDB entry 7DE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	34	38	parallel
Strand 3	B	200	204	anti-parallel
Strand 4	B	153	159	anti-parallel
Strand 5	B	222	231	anti-parallel
Strand 6	B	113	123	anti-parallel
Strand 7	B	78	79	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	170	172	anti-parallel
Strand 3	B	209	210	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	280	281	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	34	38	parallel
Strand 3	A	200	204	anti-parallel
Strand 4	A	153	159	anti-parallel
Strand 5	A	222	231	anti-parallel
Strand 6	A	113	123	anti-parallel
Strand 7	A	77	79	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	170	172	anti-parallel
Strand 3	A	209	210	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	280	281	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	34	38	parallel
Strand 3	C	200	204	anti-parallel
Strand 4	C	153	159	anti-parallel
Strand 5	C	222	231	anti-parallel
Strand 6	C	113	123	anti-parallel
Strand 7	C	77	79	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	171	172	anti-parallel
Strand 3	C	209	210	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	280	281	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	D	34	37	parallel
Strand 3	D	200	204	anti-parallel
Strand 4	D	153	159	anti-parallel
Strand 5	D	222	231	anti-parallel
Strand 6	D	113	123	anti-parallel
Strand 7	D	78	79	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	171	172	anti-parallel
Strand 3	D	209	210	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	277	first strand
Strand 2	D	280	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DE0