Analysis of interatomic Contacts of Structural Units in PDB entry:
7DE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DE4 entry

There are 2 chains in PDB entry 7DE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 404
A
 ASP 406ALA 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7DE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 50Right-handed alpha
Helix 2
AA2
A
59 71Right-handed alpha
Helix 3
AA3
A
72 74Right-handed 310
Helix 4
AA4
A
80 104Right-handed alpha
Helix 5
AA5
A
105 109Right-handed 310
Helix 6
AA6
A
131 136Right-handed 310
Helix 7
AA7
A
145 171Right-handed alpha
Helix 8
AA8
A
176 192Right-handed alpha
Helix 9
AA9
A
196 203Right-handed alpha
Helix 10
AB1
A
205 227Right-handed alpha
Helix 11
AB2
A
250 261Right-handed alpha
Helix 12
AB3
A
274 280Right-handed 310
Helix 13
AB4
A
296 298Right-handed 310
Helix 14
AB5
A
299 304Right-handed alpha
Helix 15
AB6
A
326 328Right-handed 310
Helix 16
AB7
A
349 359Right-handed alpha
Helix 17
AB8
A
376 392Right-handed alpha
Helix 18
AB9
A
409 411Right-handed 310
Helix 19
AC1
A
412 421Right-handed alpha
Helix 20
AC2
A
432 438Right-handed 310
Helix 21
AC3
A
457 459Right-handed 310
Helix 22
AC4
A
460 475Right-handed alpha
Helix 23
AC5
A
492 505Right-handed alpha
Helix 24
AC6
A
523 532Right-handed alpha
Helix 25
AC7
A
539 549Right-handed alpha
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There are 5 sheets in PDB entry 7DE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
370 373anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
267 271parallel
Strand 3
A
243 247parallel
Strand 4
A
311 313parallel
Strand 5
A
330 332parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 403first strand
Strand 2
A
484 488parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
452 454parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
449 450anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il