Analysis of interatomic Contacts of Structural Units in PDB entry:
7DE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DE8 entry

There is 1 chain in PDB entry 7DE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLN 1PHE 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7DE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
97 102Right-handed alpha
Helix 2
AA2
X
112 116Right-handed 310
Helix 3
AA3
X
123 128Right-handed 310
Helix 4
AA4
X
152 157Right-handed alpha
Helix 5
AA5
X
291 293Right-handed 310
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There are 2 sheets in PDB entry 7DE8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
33 38first strand
Strand 2
X
2 19anti-parallel
Strand 3
X
42 50anti-parallel
Strand 4
X
55 64anti-parallel
Strand 5
X
79 85anti-parallel
Strand 6
X
88 96anti-parallel
Strand 7
X
130 137anti-parallel
Strand 8
X
144 151anti-parallel
Strand 9
X
171 180anti-parallel
Strand 10
X
183 197anti-parallel
Strand 11
X
212 228anti-parallel
Strand 12
X
231 244anti-parallel
Strand 13
X
254 266anti-parallel
Strand 14
X
271 285anti-parallel
Strand 15
X
288 290anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
33 38first strand
Strand 2
X
2 19anti-parallel
Strand 3
X
328 341anti-parallel
Strand 4
X
310 321anti-parallel
Strand 5
X
295 304anti-parallel
Strand 6
X
271 285anti-parallel
Strand 7
X
288 290anti-parallel
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