Analysis of interatomic Contacts of Structural Units in PDB entry:
7DEA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DEA entry

There are 6 chains in PDB entry 7DEA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ASN 319
E	ASP 1	ASN 319
F	LEU 330	GLU 500
C	ASP 1	ASN 319
D	LEU 330	GLU 500
B	LEU 330	GLU 500

There are 28 helices in PDB entry 7DEA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	63	Right-handed alpha
Helix 2	AA2	A	64	71	Right-handed 310
Helix 3	AA3	A	97	106	Right-handed alpha
Helix 4	AA4	A	118	122	Right-handed 310
Helix 5	AA5	A	182	190	Right-handed alpha
Helix 6	AA6	E	56	63	Right-handed alpha
Helix 7	AA7	E	67	71	Right-handed 310
Helix 8	AA8	E	97	106	Right-handed alpha
Helix 9	AA9	E	118	122	Right-handed 310
Helix 10	AB1	E	182	190	Right-handed alpha
Helix 11	AB2	F	365	387	Right-handed alpha
Helix 12	AB3	F	402	455	Right-handed alpha
Helix 13	AB4	F	473	482	Right-handed alpha
Helix 14	AB5	F	486	500	Right-handed alpha
Helix 15	AB6	C	56	63	Right-handed alpha
Helix 16	AB7	C	64	71	Right-handed 310
Helix 17	AB8	C	97	106	Right-handed alpha
Helix 18	AB9	C	118	122	Right-handed 310
Helix 19	AC1	C	182	190	Right-handed alpha
Helix 20	AC2	D	365	387	Right-handed alpha
Helix 21	AC3	D	402	455	Right-handed alpha
Helix 22	AC4	D	473	482	Right-handed alpha
Helix 23	AC5	D	486	500	Right-handed alpha
Helix 24	AC6	B	365	387	Right-handed alpha
Helix 25	AC7	B	402	455	Right-handed alpha
Helix 26	AC8	B	473	482	Right-handed alpha
Helix 27	AC9	B	487	489	Right-handed 310
Helix 28	AD1	B	490	500	Right-handed alpha

There are 33 sheets in PDB entry 7DEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	364	first strand
Strand 2	B	350	356	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	465	468	anti-parallel
Strand 5	B	458	460	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	24	25	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	311	313	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	290	291	parallel
Strand 3	A	303	304	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	270	275	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	79	81	parallel
Strand 3	A	263	265	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	224	232	parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	251	257	anti-parallel
Strand 5	A	110	115	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	224	232	parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	246	249	anti-parallel
Strand 5	A	146	148	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	136	first strand
Strand 2	A	139	141	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	197	200	anti-parallel
Strand 4	A	205	208	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	277	279	anti-parallel
Strand 3	A	298	299	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	364	first strand
Strand 2	F	350	356	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	465	468	anti-parallel
Strand 5	F	458	460	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	24	25	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	311	313	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	290	291	parallel
Strand 3	E	303	304	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	270	275	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	79	81	parallel
Strand 3	E	263	265	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	224	232	parallel
Strand 3	E	171	179	anti-parallel
Strand 4	E	251	257	anti-parallel
Strand 5	E	110	115	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	224	232	parallel
Strand 3	E	171	179	anti-parallel
Strand 4	E	246	249	anti-parallel
Strand 5	E	146	148	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	136	first strand
Strand 2	E	139	141	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	164	first strand
Strand 2	E	237	242	anti-parallel
Strand 3	E	197	200	anti-parallel
Strand 4	E	205	208	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	283	first strand
Strand 2	E	277	279	anti-parallel
Strand 3	E	298	299	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	364	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	465	468	anti-parallel
Strand 5	D	458	460	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	24	25	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	311	313	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	290	291	parallel
Strand 3	C	303	304	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	270	275	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	79	81	parallel
Strand 3	C	263	265	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	224	232	parallel
Strand 3	C	171	179	anti-parallel
Strand 4	C	251	257	anti-parallel
Strand 5	C	110	115	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	224	232	parallel
Strand 3	C	171	179	anti-parallel
Strand 4	C	246	249	anti-parallel
Strand 5	C	146	148	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	139	141	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	237	242	anti-parallel
Strand 3	C	197	200	anti-parallel
Strand 4	C	205	208	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	277	279	anti-parallel
Strand 3	C	298	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DEA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DEA