Analysis of interatomic Contacts of Structural Units in PDB entry:
7DEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DEG entry

There are 6 chains in PDB entry 7DEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LYS 592
C
 PHE 10GLY 41
B
 ARG 3GLU 149
D
 VAL 6LYS 592
F
 PHE 10GLY 41
E
 ARG 3GLU 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 7DEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 39Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
68 85Right-handed alpha
Helix 4
AA4
A
90 110Right-handed alpha
Helix 5
AA5
A
130 143Right-handed alpha
Helix 6
AA6
A
144 151Right-handed alpha
Helix 7
AA7
A
156 162Right-handed alpha
Helix 8
AA8
A
169 185Right-handed alpha
Helix 9
AA9
A
186 201Right-handed alpha
Helix 10
AB1
A
222 239Right-handed alpha
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
252 266Right-handed alpha
Helix 13
AB4
A
270 274Right-handed 310
Helix 14
AB5
A
285 297Right-handed alpha
Helix 15
AB6
A
298 319Right-handed alpha
Helix 16
AB7
A
320 323Right-handed 310
Helix 17
AB8
A
343 367Right-handed alpha
Helix 18
AB9
A
370 375Right-handed alpha
Helix 19
AC1
A
378 387Right-handed alpha
Helix 20
AC2
A
391 407Right-handed alpha
Helix 21
AC3
A
414 442Right-handed alpha
Helix 22
AC4
A
464 466Right-handed 310
Helix 23
AC5
A
467 473Right-handed alpha
Helix 24
AC6
A
474 498Right-handed alpha
Helix 25
AC7
A
528 535Right-handed alpha
Helix 26
AC8
A
540 546Right-handed alpha
Helix 27
AC9
A
573 583Right-handed alpha
Helix 28
AD1
A
584 592Right-handed alpha
Helix 29
AD2
C
12 22Right-handed alpha
Helix 30
AD3
C
28 39Right-handed alpha
Helix 31
AD4
B
4 29Right-handed alpha
Helix 32
AD5
D
9 39Right-handed alpha
Helix 33
AD6
D
52 66Right-handed alpha
Helix 34
AD7
D
68 85Right-handed alpha
Helix 35
AD8
D
90 110Right-handed alpha
Helix 36
AD9
D
130 143Right-handed alpha
Helix 37
AE1
D
144 151Right-handed alpha
Helix 38
AE2
D
156 162Right-handed alpha
Helix 39
AE3
D
169 185Right-handed alpha
Helix 40
AE4
D
186 201Right-handed alpha
Helix 41
AE5
D
222 239Right-handed alpha
Helix 42
AE6
D
239 244Right-handed alpha
Helix 43
AE7
D
252 266Right-handed alpha
Helix 44
AE8
D
270 274Right-handed 310
Helix 45
AE9
D
285 297Right-handed alpha
Helix 46
AF1
D
298 319Right-handed alpha
Helix 47
AF2
D
320 323Right-handed 310
Helix 48
AF3
D
343 367Right-handed alpha
Helix 49
AF4
D
370 375Right-handed alpha
Helix 50
AF5
D
378 387Right-handed alpha
Helix 51
AF6
D
391 407Right-handed alpha
Helix 52
AF7
D
414 442Right-handed alpha
Helix 53
AF8
D
464 466Right-handed 310
Helix 54
AF9
D
467 473Right-handed alpha
Helix 55
AG1
D
474 498Right-handed alpha
Helix 56
AG2
D
528 535Right-handed alpha
Helix 57
AG3
D
540 546Right-handed alpha
Helix 58
AG4
D
573 583Right-handed alpha
Helix 59
AG5
D
584 592Right-handed alpha
Helix 60
AG6
F
12 22Right-handed alpha
Helix 61
AG7
F
28 39Right-handed alpha
Helix 62
AG8
E
4 29Right-handed alpha
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There are 6 sheets in PDB entry 7DEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
67 69anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
87 91parallel
Strand 4
B
115 117anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
145 148parallel
Strand 3
B
125 130anti-parallel
Strand 4
B
96 100anti-parallel
Strand 5
B
105 109anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 49first strand
Strand 2
E
58 64anti-parallel
Strand 3
E
67 69anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 49first strand
Strand 2
E
58 64anti-parallel
Strand 3
E
87 91parallel
Strand 4
E
115 117anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 79first strand
Strand 2
E
145 148parallel
Strand 3
E
125 130anti-parallel
Strand 4
E
96 100anti-parallel
Strand 5
E
105 109anti-parallel
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