Analysis of interatomic Contacts of Structural Units in PDB entry:
7DEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DEV entry

There is 1 chain in PDB entry 7DEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5PHE 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7DEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
54 61Right-handed alpha
Helix 3
AA3
A
61 75Right-handed alpha
Helix 4
AA4
A
76 81Right-handed 310
Helix 5
AA5
A
101 103Right-handed 310
Helix 6
AA6
A
116 122Right-handed alpha
Helix 7
AA7
A
128 133Right-handed alpha
Helix 8
AA8
A
178 196Right-handed alpha
Helix 9
AA9
A
220 238Right-handed alpha
Helix 10
AB1
A
256 270Right-handed alpha
Helix 11
AB2
A
280 301Right-handed alpha
Helix 12
AB3
A
322 324Right-handed 310
Helix 13
AB4
A
347 352Right-handed alpha
Helix 14
AB5
A
354 370Right-handed alpha
Helix 15
AB6
A
376 382Right-handed 310
Helix 16
AB7
A
383 389Right-handed alpha
Helix 17
AB8
A
390 391Right-handed 310
Helix 18
AB9
A
392 394Right-handed 310
Helix 19
AC1
A
406 410Right-handed 310
Helix 20
AC2
A
422 428Right-handed 310
Helix 21
AC3
A
450 464Right-handed alpha
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There are 3 sheets in PDB entry 7DEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
106 113anti-parallel
Strand 3
A
154 161parallel
Strand 4
A
165 172anti-parallel
Strand 5
A
43 50anti-parallel
Strand 6
A
419 421anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
83 87anti-parallel
Strand 4
A
148 152anti-parallel
Strand 5
A
143 144anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
249 255anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
430 435anti-parallel
Strand 5
A
396 400parallel
Strand 6
A
312 320parallel
Strand 7
A
338 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il