Analysis of interatomic Contacts of Structural Units in PDB entry:
7DF4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DF4 entry

There are 4 chains in PDB entry 7DF4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ASP 615
C	VAL 16	SER 1147
B	GLN 14	SER 1147
D	GLN 14	SER 1147

There are 92 helices in PDB entry 7DF4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	53	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	90	102	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	109	130	Right-handed alpha
Helix 6	AA6	A	146	155	Right-handed alpha
Helix 7	AA7	A	157	172	Right-handed alpha
Helix 8	AA8	A	176	194	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	220	252	Right-handed alpha
Helix 11	AB2	A	265	267	Right-handed 310
Helix 12	AB3	A	275	277	Right-handed 310
Helix 13	AB4	A	278	283	Right-handed alpha
Helix 14	AB5	A	293	301	Right-handed alpha
Helix 15	AB6	A	303	319	Right-handed alpha
Helix 16	AB7	A	324	330	Right-handed alpha
Helix 17	AB8	A	365	383	Right-handed alpha
Helix 18	AB9	A	384	388	Right-handed 310
Helix 19	AC1	A	389	393	Right-handed 310
Helix 20	AC2	A	398	413	Right-handed alpha
Helix 21	AC3	A	414	422	Right-handed alpha
Helix 22	AC4	A	431	447	Right-handed alpha
Helix 23	AC5	A	448	466	Right-handed alpha
Helix 24	AC6	A	469	471	Right-handed 310
Helix 25	AC7	A	472	484	Right-handed alpha
Helix 26	AC8	A	499	502	Right-handed 310
Helix 27	AC9	A	503	508	Right-handed alpha
Helix 28	AD1	A	513	533	Right-handed alpha
Helix 29	AD2	A	548	559	Right-handed alpha
Helix 30	AD3	A	565	572	Right-handed alpha
Helix 31	AD4	A	581	588	Right-handed alpha
Helix 32	AD5	A	588	599	Right-handed alpha
Helix 33	AD6	A	600	602	Right-handed 310
Helix 34	AD7	C	294	304	Right-handed alpha
Helix 35	AD8	C	337	342	Right-handed alpha
Helix 36	AD9	C	365	371	Right-handed alpha
Helix 37	AE1	C	384	388	Right-handed 310
Helix 38	AE2	C	403	408	Right-handed 310
Helix 39	AE3	C	438	443	Right-handed alpha
Helix 40	AE4	C	737	743	Right-handed alpha
Helix 41	AE5	C	746	755	Right-handed alpha
Helix 42	AE6	C	758	782	Right-handed alpha
Helix 43	AE7	C	816	825	Right-handed alpha
Helix 44	AE8	C	850	854	Right-handed alpha
Helix 45	AE9	C	866	884	Right-handed alpha
Helix 46	AF1	C	897	902	Right-handed alpha
Helix 47	AF2	C	902	910	Right-handed alpha
Helix 48	AF3	C	913	941	Right-handed alpha
Helix 49	AF4	C	945	965	Right-handed alpha
Helix 50	AF5	C	966	968	Right-handed 310
Helix 51	AF6	C	976	984	Right-handed alpha
Helix 52	AF7	C	985	1032	Right-handed alpha
Helix 53	AF8	C	1140	1147	Right-handed alpha
Helix 54	AF9	B	294	304	Right-handed alpha
Helix 55	AG1	B	337	343	Right-handed alpha
Helix 56	AG2	B	365	371	Right-handed alpha
Helix 57	AG3	B	385	389	Right-handed 310
Helix 58	AG4	B	405	410	Right-handed 310
Helix 59	AG5	B	416	422	Right-handed alpha
Helix 60	AG6	B	502	505	Right-handed 310
Helix 61	AG7	B	737	743	Right-handed alpha
Helix 62	AG8	B	746	757	Right-handed alpha
Helix 63	AG9	B	757	782	Right-handed alpha
Helix 64	AH1	B	816	826	Right-handed alpha
Helix 65	AH2	B	849	856	Right-handed alpha
Helix 66	AH3	B	866	885	Right-handed alpha
Helix 67	AH4	B	897	910	Right-handed alpha
Helix 68	AH5	B	913	941	Right-handed alpha
Helix 69	AH6	B	942	944	Right-handed 310
Helix 70	AH7	B	945	965	Right-handed alpha
Helix 71	AH8	B	966	968	Right-handed 310
Helix 72	AH9	B	976	984	Right-handed alpha
Helix 73	AI1	B	985	1032	Right-handed alpha
Helix 74	AI2	B	1142	1147	Right-handed 310
Helix 75	AI3	D	294	304	Right-handed alpha
Helix 76	AI4	D	365	371	Right-handed alpha
Helix 77	AI5	D	384	388	Right-handed 310
Helix 78	AI6	D	403	410	Right-handed 310
Helix 79	AI7	D	737	743	Right-handed alpha
Helix 80	AI8	D	746	754	Right-handed alpha
Helix 81	AI9	D	755	757	Right-handed 310
Helix 82	AJ1	D	758	782	Right-handed alpha
Helix 83	AJ2	D	816	826	Right-handed alpha
Helix 84	AJ3	D	849	855	Right-handed alpha
Helix 85	AJ4	D	866	884	Right-handed alpha
Helix 86	AJ5	D	897	910	Right-handed alpha
Helix 87	AJ6	D	913	941	Right-handed alpha
Helix 88	AJ7	D	942	944	Right-handed 310
Helix 89	AJ8	D	945	965	Right-handed alpha
Helix 90	AJ9	D	976	984	Right-handed alpha
Helix 91	AK1	D	985	1032	Right-handed alpha
Helix 92	AK2	D	1140	1147	Right-handed alpha

There are 52 sheets in PDB entry 7DF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	60	67	anti-parallel
Strand 3	C	263	269	anti-parallel
Strand 4	C	89	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	208	anti-parallel
Strand 7	C	224	230	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	B	565	566	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	246	anti-parallel
Strand 3	C	140	144	parallel
Strand 4	C	156	157	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	246	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	131	anti-parallel
Strand 6	C	168	171	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	538	543	parallel
Strand 3	C	546	554	anti-parallel
Strand 4	C	584	589	anti-parallel
Strand 5	C	573	577	anti-parallel
Strand 6	C	566	567	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	358	first strand
Strand 2	C	395	402	anti-parallel
Strand 3	C	508	514	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	665	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	704	first strand
Strand 2	D	787	790	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	715	first strand
Strand 2	C	1072	1077	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	727	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	787	790	first strand
Strand 2	B	701	704	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	63	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	D	566	567	parallel
Strand 3	D	573	577	anti-parallel
Strand 4	D	584	588	anti-parallel
Strand 5	D	546	554	anti-parallel
Strand 6	D	538	543	anti-parallel
Strand 7	D	325	328	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	287	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	263	269	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	186	197	anti-parallel
Strand 5	B	200	212	anti-parallel
Strand 6	B	224	229	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	133	anti-parallel
Strand 6	B	163	171	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	141	142	anti-parallel
Strand 3	B	237	245	parallel
Strand 4	B	259	260	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	649	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	656	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	727	first strand
Strand 2	B	1059	1076	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	789	first strand
Strand 2	D	701	703	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	60	64	anti-parallel
Strand 3	D	264	269	anti-parallel
Strand 4	D	89	96	anti-parallel
Strand 5	D	188	197	anti-parallel
Strand 6	D	200	208	anti-parallel
Strand 7	D	224	229	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	55	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	285	290	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	245	anti-parallel
Strand 3	D	140	143	parallel
Strand 4	D	156	157	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	245	anti-parallel
Strand 3	D	101	107	anti-parallel
Strand 4	D	116	121	anti-parallel
Strand 5	D	126	133	anti-parallel
Strand 6	D	163	171	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	317	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	609	612	anti-parallel
Strand 4	D	649	651	anti-parallel
Strand 5	D	642	644	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	395	402	anti-parallel
Strand 3	D	508	514	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	656	first strand
Strand 2	D	691	696	parallel
Strand 3	D	670	675	anti-parallel
Strand 4	D	664	667	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	715	first strand
Strand 2	D	1072	1076	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	718	728	first strand
Strand 2	D	1059	1069	anti-parallel
Strand 3	D	1047	1056	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	734	736	first strand
Strand 2	D	858	860	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1120	1122	first strand
Strand 2	D	1087	1090	anti-parallel
Strand 3	D	1081	1082	anti-parallel
Strand 4	D	1133	1134	parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1094	1097	first strand
Strand 2	D	1102	1105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DF4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DF4