Analysis of interatomic Contacts of Structural Units in PDB entry:
7DF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DF8 entry

There is 1 chain in PDB entry 7DF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 332ALA 1274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7DF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
332 350Right-handed alpha
Helix 2
AA2
A
351 368Right-handed alpha
Helix 3
AA3
A
369 371Right-handed 310
Helix 4
AA4
A
388 402Right-handed alpha
Helix 5
AA5
A
437 453Right-handed alpha
Helix 6
AA6
A
467 471Right-handed alpha
Helix 7
AA7
A
489 493Right-handed 310
Helix 8
AA8
A
497 502Right-handed alpha
Helix 9
AA9
A
517 528Right-handed alpha
Helix 10
AB1
A
563 567Right-handed 310
Helix 11
AB2
A
583 607Right-handed alpha
Helix 12
AB3
A
619 626Right-handed alpha
Helix 13
AB4
A
628 637Right-handed alpha
Helix 14
AB5
A
637 647Right-handed alpha
Helix 15
AB6
A
665 690Right-handed alpha
Helix 16
AB7
A
697 702Right-handed alpha
Helix 17
AB8
A
711 724Right-handed alpha
Helix 18
AB9
A
731 742Right-handed alpha
Helix 19
AC1
A
743 761Right-handed alpha
Helix 20
AC2
A
762 764Right-handed 310
Helix 21
AC3
A
766 790Right-handed alpha
Helix 22
AC4
A
790 802Right-handed alpha
Helix 23
AC5
A
836 841Right-handed alpha
Helix 24
AC6
A
844 864Right-handed alpha
Helix 25
AC7
A
865 867Right-handed 310
Helix 26
AC8
A
872 877Right-handed 310
Helix 27
AC9
A
882 894Right-handed alpha
Helix 28
AD1
A
912 918Right-handed alpha
Helix 29
AD2
A
929 938Right-handed alpha
Helix 30
AD3
A
952 961Right-handed alpha
Helix 31
AD4
A
1004 1016Right-handed alpha
Helix 32
AD5
A
1058 1081Right-handed alpha
Helix 33
AD6
A
1098 1103Right-handed alpha
Helix 34
AD7
A
1104 1106Right-handed 310
Helix 35
AD8
A
1107 1118Right-handed alpha
Helix 36
AD9
A
1120 1125Right-handed alpha
Helix 37
AE1
A
1126 1131Right-handed alpha
Helix 38
AE2
A
1140 1160Right-handed alpha
Helix 39
AE3
A
1164 1176Right-handed alpha
Helix 40
AE4
A
1177 1191Right-handed alpha
Helix 41
AE5
A
1196 1216Right-handed alpha
Helix 42
AE6
A
1220 1226Right-handed alpha
Helix 43
AE7
A
1227 1229Right-handed 310
Helix 44
AE8
A
1232 1239Right-handed alpha
Helix 45
AE9
A
1240 1255Right-handed alpha
Helix 46
AF1
A
1257 1266Right-handed alpha
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There are 7 sheets in PDB entry 7DF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
569 576anti-parallel
Strand 3
A
556 557anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
569 576anti-parallel
Strand 3
A
406 412anti-parallel
Strand 4
A
614 616anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
429 432anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
463 466anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 508first strand
Strand 2
A
513 516anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 951first strand
Strand 2
A
1050 1053anti-parallel
Strand 3
A
899 904anti-parallel
Strand 4
A
1092 1095anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1038first strand
Strand 2
A
1044 1047anti-parallel
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