Analysis of interatomic Contacts of Structural Units in PDB entry:
7DF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DF9 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 7DF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5HIS 368
V
 ARG 346PRO 349
V
 LEU 351PRO 353
V
 CYS 358CYS 358
V
 ALA 361ALA 361
V
 LEU 365ASP 368
L
 SER 13ARG 224
H
 VAL 17GLU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7DF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 48Right-handed 310
Helix 2
AA2
A
98 109Right-handed alpha
Helix 3
AA3
A
332 339Right-handed 310
Helix 4
AA4
L
134 141Right-handed alpha
Helix 5
AA5
L
196 200Right-handed alpha
Helix 6
AA6
H
77 80Right-handed 310
Helix 7
AA7
H
223 226Right-handed 310
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There are 17 sheets in PDB entry 7DF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
18 22anti-parallel
Strand 4
A
7 12anti-parallel
Strand 5
V
361 364anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
164 171parallel
Strand 3
A
140 148anti-parallel
Strand 4
A
53 63anti-parallel
Strand 5
A
75 87anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
164 171parallel
Strand 3
A
140 148anti-parallel
Strand 4
A
127 129anti-parallel
Strand 5
A
288 290anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
269 274anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
343 351parallel
Strand 3
A
316 329anti-parallel
Strand 4
A
228 230anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
343 351parallel
Strand 3
A
316 329anti-parallel
Strand 4
A
233 242anti-parallel
Strand 5
A
249 255anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 19first strand
Strand 2
L
32 37anti-parallel
Strand 3
L
83 88anti-parallel
Strand 4
L
75 79anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 26first strand
Strand 2
L
116 119parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 61first strand
Strand 2
L
46 51anti-parallel
Strand 3
L
98 103anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
129 130first strand
Strand 2
L
142 148anti-parallel
Strand 3
L
190 195anti-parallel
Strand 4
L
172 174anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
150 152first strand
Strand 2
L
186 187anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
159 163first strand
Strand 2
L
205 209anti-parallel
Strand 3
L
219 221anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 36first strand
Strand 2
H
95 98anti-parallel
Strand 3
H
83 86anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
72 75first strand
Strand 2
H
62 67anti-parallel
Strand 3
H
49 53anti-parallel
Strand 4
H
108 112anti-parallel
Strand 5
H
129 130anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 200anti-parallel
Strand 4
H
191 192anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
153 154first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
203 207anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
173 175first strand
Strand 2
H
217 221anti-parallel
Strand 3
H
228 232anti-parallel
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