Analysis of interatomic Contacts of Structural Units in PDB entry:
7DFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DFB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 7DFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5HIS 368
V
 ARG 346ARG 346
V
 PRO 348PRO 349
V
 LEU 351PRO 353
V
 CYS 358CYS 358
V
 ALA 361ALA 361
V
 SER 363ASP 368
L
 SER 13ARG 224
H
 VAL 17GLU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7DFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 48Right-handed 310
Helix 2
AA2
A
98 109Right-handed alpha
Helix 3
AA3
A
278 282Right-handed 310
Helix 4
AA4
L
196 200Right-handed alpha
Helix 5
AA5
H
77 81Right-handed 310
Helix 6
AA6
H
223 226Right-handed 310
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There are 14 sheets in PDB entry 7DFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
18 22anti-parallel
Strand 4
A
7 12anti-parallel
Strand 5
V
361 364anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
141 150anti-parallel
Strand 3
A
127 129anti-parallel
Strand 4
A
288 290anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
141 150anti-parallel
Strand 3
A
53 63anti-parallel
Strand 4
A
74 85anti-parallel
Strand 5
V
349 350anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
266 274anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
343 352parallel
Strand 3
A
316 329anti-parallel
Strand 4
A
228 242anti-parallel
Strand 5
A
247 258anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
17 19first strand
Strand 2
L
32 38anti-parallel
Strand 3
L
83 88anti-parallel
Strand 4
L
75 80anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 24first strand
Strand 2
L
115 117parallel
Strand 3
L
98 103anti-parallel
Strand 4
L
46 51anti-parallel
Strand 5
L
58 62anti-parallel
Strand 6
L
66 67anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
142 150first strand
Strand 2
L
187 195anti-parallel
Strand 3
L
172 176anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
159 163first strand
Strand 2
L
205 209anti-parallel
Strand 3
L
218 222anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 22first strand
Strand 2
H
33 38anti-parallel
Strand 3
H
93 98anti-parallel
Strand 4
H
83 88anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
26 27first strand
Strand 2
H
129 133parallel
Strand 3
H
107 115anti-parallel
Strand 4
H
47 54anti-parallel
Strand 5
H
61 66anti-parallel
Strand 6
H
73 75anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
185 187anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 146first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
191 192anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
174 176first strand
Strand 2
H
217 221anti-parallel
Strand 3
H
228 232anti-parallel
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