Analysis of interatomic Contacts of Structural Units in PDB entry:
7DFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DFC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 7DFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 5GLU 367
V
ARG 346ARG 346
V
PRO 348PRO 349
V
LEU 351CYS 358
V
ALA 361ALA 361
V
LEU 365LYS 367
L
ASP 14ARG 224
H
VAL 17GLU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7DFC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
98 109Right-handed alpha
Helix 2
AA2
A
278 282Right-handed 310
Helix 3
AA3
A
332 336Right-handed 310
Helix 4
AA4
L
134 139Right-handed alpha
Helix 5
AA5
L
196 202Right-handed alpha
Helix 6
AA6
H
43 45Right-handed 310
Helix 7
AA7
H
149 151Right-handed 310
Helix 8
AA8
H
223 226Right-handed 310
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There are 16 sheets in PDB entry 7DFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 117first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
18 22anti-parallel
Strand 4
A
7 12anti-parallel
Strand 5
V
361 364anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 28first strand
Strand 2
A
163 171parallel
Strand 3
A
141 150anti-parallel
Strand 4
A
127 129anti-parallel
Strand 5
A
288 290anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 28first strand
Strand 2
A
163 171parallel
Strand 3
A
141 150anti-parallel
Strand 4
A
53 63anti-parallel
Strand 5
A
73 87anti-parallel
Strand 6
V
349 351anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 188first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
266 274anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 209first strand
Strand 2
A
343 352parallel
Strand 3
A
316 329anti-parallel
Strand 4
A
228 242anti-parallel
Strand 5
A
246 258anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
17 19first strand
Strand 2
L
32 38anti-parallel
Strand 3
L
83 88anti-parallel
Strand 4
L
75 80anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
23 25first strand
Strand 2
L
116 118parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
66 67first strand
Strand 2
L
58 62anti-parallel
Strand 3
L
46 51anti-parallel
Strand 4
L
98 103anti-parallel
Strand 5
L
110 111anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
127 131first strand
Strand 2
L
142 152anti-parallel
Strand 3
L
186 195anti-parallel
Strand 4
L
172 176anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
158 163first strand
Strand 2
L
205 211anti-parallel
Strand 3
L
214 222anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
18 21first strand
Strand 2
H
32 40anti-parallel
Strand 3
H
93 99anti-parallel
Strand 4
H
83 88anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
26 27first strand
Strand 2
H
129 133parallel
Strand 3
H
107 115anti-parallel
Strand 4
H
47 54anti-parallel
Strand 5
H
61 67anti-parallel
Strand 6
H
72 75anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
26 27first strand
Strand 2
H
129 133parallel
Strand 3
H
107 115anti-parallel
Strand 4
H
122 125anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
142 146first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
185 187anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
153 154first strand
Strand 2
H
157 167anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
191 192anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
173 176first strand
Strand 2
H
217 222anti-parallel
Strand 3
H
227 232anti-parallel
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