Analysis of interatomic Contacts of Structural Units in PDB entry:
7DFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DFS entry

There is 1 chain in PDB entry 7DFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LEU 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7DFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 37Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
95 103Right-handed alpha
Helix 5
AA5
A
119 134Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
153 157Right-handed 310
Helix 8
AA8
A
162 182Right-handed alpha
Helix 9
AA9
A
199 208Right-handed alpha
Helix 10
AB1
A
209 212Right-handed 310
Helix 11
AB2
A
225 229Right-handed 310
Helix 12
AB3
A
230 236Right-handed alpha
Helix 13
AB4
A
236 245Right-handed alpha
Helix 14
AB5
A
247 256Right-handed alpha
Helix 15
AB6
A
279 297Right-handed alpha
Helix 16
AB7
A
323 336Right-handed alpha
Helix 17
AB8
A
406 410Right-handed 310
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There are 6 sheets in PDB entry 7DFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
380 386parallel
Strand 3
A
443 448anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
58 61parallel
Strand 3
A
109 113parallel
Strand 4
A
137 142parallel
Strand 5
A
187 193parallel
Strand 6
A
214 221parallel
Strand 7
A
261 266parallel
Strand 8
A
300 305parallel
Strand 9
A
22 27parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
92 94parallel
Strand 3
A
78 79anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
351 358anti-parallel
Strand 3
A
361 369anti-parallel
Strand 4
A
451 456anti-parallel
Strand 5
A
392 399anti-parallel
Strand 6
A
414 415anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
351 358anti-parallel
Strand 3
A
361 369anti-parallel
Strand 4
A
451 456anti-parallel
Strand 5
A
392 399anti-parallel
Strand 6
A
434 437anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
427 428anti-parallel
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