Analysis of interatomic Contacts of Structural Units in PDB entry:
7DFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DFV entry

There are 4 chains in PDB entry 7DFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 81	SER 600
C	HIS 85	SER 600
D	ARG 81	SER 600
A	HIS 85	SER 600

There are114 helices in PDB entry 7DFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	92	97	Right-handed alpha
Helix 2	AA2	B	99	111	Right-handed alpha
Helix 3	AA3	B	117	121	Right-handed 310
Helix 4	AA4	B	126	137	Right-handed alpha
Helix 5	AA5	B	148	151	Right-handed 310
Helix 6	AA6	B	152	170	Right-handed alpha
Helix 7	AA7	B	181	188	Right-handed alpha
Helix 8	AA8	B	192	200	Right-handed alpha
Helix 9	AA9	B	205	220	Right-handed alpha
Helix 10	AB1	B	227	229	Right-handed 310
Helix 11	AB2	B	231	248	Right-handed alpha
Helix 12	AB3	B	262	274	Right-handed alpha
Helix 13	AB4	B	292	305	Right-handed alpha
Helix 14	AB5	B	306	308	Right-handed 310
Helix 15	AB6	B	316	321	Right-handed alpha
Helix 16	AB7	B	327	344	Right-handed alpha
Helix 17	AB8	B	355	361	Right-handed alpha
Helix 18	AB9	B	375	383	Right-handed alpha
Helix 19	AC1	B	385	389	Right-handed 310
Helix 20	AC2	B	401	408	Right-handed alpha
Helix 21	AC3	B	420	433	Right-handed alpha
Helix 22	AC4	B	442	453	Right-handed alpha
Helix 23	AC5	B	456	466	Right-handed alpha
Helix 24	AC6	B	471	484	Right-handed alpha
Helix 25	AC7	B	487	499	Right-handed alpha
Helix 26	AC8	B	502	515	Right-handed alpha
Helix 27	AC9	B	520	528	Right-handed alpha
Helix 28	AD1	B	533	544	Right-handed alpha
Helix 29	AD2	B	557	568	Right-handed alpha
Helix 30	AD3	B	592	596	Right-handed 310
Helix 31	AD4	C	92	97	Right-handed alpha
Helix 32	AD5	C	99	111	Right-handed alpha
Helix 33	AD6	C	131	137	Right-handed alpha
Helix 34	AD7	C	152	168	Right-handed alpha
Helix 35	AD8	C	181	187	Right-handed alpha
Helix 36	AD9	C	189	200	Right-handed alpha
Helix 37	AE1	C	204	219	Right-handed alpha
Helix 38	AE2	C	231	249	Right-handed alpha
Helix 39	AE3	C	254	259	Right-handed 310
Helix 40	AE4	C	261	274	Right-handed alpha
Helix 41	AE5	C	292	305	Right-handed alpha
Helix 42	AE6	C	306	308	Right-handed 310
Helix 43	AE7	C	316	321	Right-handed alpha
Helix 44	AE8	C	327	344	Right-handed alpha
Helix 45	AE9	C	355	362	Right-handed alpha
Helix 46	AF1	C	375	383	Right-handed alpha
Helix 47	AF2	C	401	409	Right-handed alpha
Helix 48	AF3	C	420	434	Right-handed alpha
Helix 49	AF4	C	442	453	Right-handed alpha
Helix 50	AF5	C	456	466	Right-handed alpha
Helix 51	AF6	C	471	485	Right-handed alpha
Helix 52	AF7	C	487	499	Right-handed alpha
Helix 53	AF8	C	502	515	Right-handed alpha
Helix 54	AF9	C	520	529	Right-handed alpha
Helix 55	AG1	C	533	544	Right-handed alpha
Helix 56	AG2	C	557	568	Right-handed alpha
Helix 57	AG3	C	588	594	Right-handed alpha
Helix 58	AG4	D	92	97	Right-handed alpha
Helix 59	AG5	D	99	111	Right-handed alpha
Helix 60	AG6	D	117	121	Right-handed 310
Helix 61	AG7	D	126	137	Right-handed alpha
Helix 62	AG8	D	148	151	Right-handed 310
Helix 63	AG9	D	152	170	Right-handed alpha
Helix 64	AH1	D	181	188	Right-handed alpha
Helix 65	AH2	D	192	200	Right-handed alpha
Helix 66	AH3	D	205	220	Right-handed alpha
Helix 67	AH4	D	227	229	Right-handed 310
Helix 68	AH5	D	231	248	Right-handed alpha
Helix 69	AH6	D	262	274	Right-handed alpha
Helix 70	AH7	D	292	305	Right-handed alpha
Helix 71	AH8	D	306	308	Right-handed 310
Helix 72	AH9	D	316	321	Right-handed alpha
Helix 73	AI1	D	327	344	Right-handed alpha
Helix 74	AI2	D	355	361	Right-handed alpha
Helix 75	AI3	D	375	383	Right-handed alpha
Helix 76	AI4	D	385	389	Right-handed 310
Helix 77	AI5	D	401	408	Right-handed alpha
Helix 78	AI6	D	420	433	Right-handed alpha
Helix 79	AI7	D	442	453	Right-handed alpha
Helix 80	AI8	D	456	466	Right-handed alpha
Helix 81	AI9	D	471	484	Right-handed alpha
Helix 82	AJ1	D	487	499	Right-handed alpha
Helix 83	AJ2	D	502	515	Right-handed alpha
Helix 84	AJ3	D	520	528	Right-handed alpha
Helix 85	AJ4	D	533	544	Right-handed alpha
Helix 86	AJ5	D	557	568	Right-handed alpha
Helix 87	AJ6	D	592	596	Right-handed 310
Helix 88	AJ7	A	92	97	Right-handed alpha
Helix 89	AJ8	A	99	111	Right-handed alpha
Helix 90	AJ9	A	131	137	Right-handed alpha
Helix 91	AK1	A	152	168	Right-handed alpha
Helix 92	AK2	A	181	187	Right-handed alpha
Helix 93	AK3	A	189	200	Right-handed alpha
Helix 94	AK4	A	204	219	Right-handed alpha
Helix 95	AK5	A	231	249	Right-handed alpha
Helix 96	AK6	A	254	259	Right-handed 310
Helix 97	AK7	A	261	274	Right-handed alpha
Helix 98	AK8	A	292	305	Right-handed alpha
Helix 99	AK9	A	306	308	Right-handed 310
Helix 100	AL1	A	316	321	Right-handed alpha
Helix 101	AL2	A	327	344	Right-handed alpha
Helix 102	AL3	A	355	362	Right-handed alpha
Helix 103	AL4	A	375	383	Right-handed alpha
Helix 104	AL5	A	401	409	Right-handed alpha
Helix 105	AL6	A	420	434	Right-handed alpha
Helix 106	AL7	A	442	453	Right-handed alpha
Helix 107	AL8	A	456	466	Right-handed alpha
Helix 108	AL9	A	471	485	Right-handed alpha
Helix 109	AM1	A	487	499	Right-handed alpha
Helix 110	AM2	A	502	515	Right-handed alpha
Helix 111	AM3	A	520	529	Right-handed alpha
Helix 112	AM4	A	533	544	Right-handed alpha
Helix 113	AM5	A	557	568	Right-handed alpha
Helix 114	AM6	A	588	594	Right-handed alpha

There are 14 sheets in PDB entry 7DFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	138	145	parallel
Strand 3	B	172	177	parallel
Strand 4	B	224	225	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	314	first strand
Strand 2	B	366	370	parallel
Strand 3	B	394	399	parallel
Strand 4	B	282	286	parallel
Strand 5	B	413	415	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	549	first strand
Strand 2	B	554	555	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	140	145	parallel
Strand 3	C	172	177	parallel
Strand 4	C	224	225	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	314	first strand
Strand 2	C	366	373	parallel
Strand 3	C	394	399	parallel
Strand 4	C	282	286	parallel
Strand 5	C	412	415	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	550	first strand
Strand 2	C	553	555	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	574	first strand
Strand 2	C	579	580	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	90	first strand
Strand 2	D	138	145	parallel
Strand 3	D	172	177	parallel
Strand 4	D	224	225	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	314	first strand
Strand 2	D	366	370	parallel
Strand 3	D	394	399	parallel
Strand 4	D	282	286	parallel
Strand 5	D	413	415	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	549	first strand
Strand 2	D	554	555	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	140	145	parallel
Strand 3	A	172	177	parallel
Strand 4	A	224	225	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	314	first strand
Strand 2	A	366	373	parallel
Strand 3	A	394	399	parallel
Strand 4	A	282	286	parallel
Strand 5	A	412	415	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	550	first strand
Strand 2	A	553	555	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	579	580	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DFV