Analysis of interatomic Contacts of Structural Units in PDB entry:
7DG2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DG2 entry

There are 3 chains in PDB entry 7DG2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2ILE 233
C
 HIS 47GLU 253
D
 HIS 107THR 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7DG2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 20Right-handed alpha
Helix 2
AA2
A
24 38Right-handed alpha
Helix 3
AA3
A
46 59Right-handed alpha
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
96 113Right-handed alpha
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
136 150Right-handed alpha
Helix 8
AA8
A
163 178Right-handed alpha
Helix 9
AA9
A
206 214Right-handed alpha
Helix 10
AB1
C
48 67Right-handed alpha
Helix 11
AB2
C
75 82Right-handed alpha
Helix 12
AB3
C
83 88Right-handed 310
Helix 13
AB4
C
89 106Right-handed alpha
Helix 14
AB5
C
136 155Right-handed alpha
Helix 15
AB6
C
161 171Right-handed alpha
Helix 16
AB7
C
184 191Right-handed alpha
Helix 17
AB8
C
191 196Right-handed alpha
Helix 18
AB9
C
217 224Right-handed alpha
Helix 19
AC1
C
225 237Right-handed alpha
Helix 20
AC2
C
240 243Right-handed 310
Helix 21
AC3
C
244 253Right-handed alpha
Helix 22
AC4
D
112 125Right-handed alpha
Helix 23
AC5
D
153 164Right-handed alpha
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There are 6 sheets in PDB entry 7DG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
63 69anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
159 162anti-parallel
Strand 3
A
153 156anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
191 192anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
204 205anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 74first strand
Strand 2
C
118 123anti-parallel
Strand 3
C
107 113anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 160first strand
Strand 2
C
212 216anti-parallel
Strand 3
C
199 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il