Analysis of interatomic Contacts of Structural Units in PDB entry:
7DG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DG5 entry

There are 4 chains in PDB entry 7DG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 493	LYS 673
B	LYS 493	ARG 683
C	GLN 497	LYS 675
D	LYS 493	ARG 683

There are 46 helices in PDB entry 7DG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	494	511	Right-handed alpha
Helix 2	AA2	A	527	529	Right-handed 310
Helix 3	AA3	A	530	539	Right-handed alpha
Helix 4	AA4	A	540	543	Right-handed 310
Helix 5	AA5	A	549	564	Right-handed alpha
Helix 6	AA6	A	582	588	Right-handed 310
Helix 7	AA7	A	602	604	Right-handed 310
Helix 8	AA8	A	605	614	Right-handed alpha
Helix 9	AA9	A	621	631	Right-handed alpha
Helix 10	AB1	A	655	663	Right-handed alpha
Helix 11	AB2	A	664	673	Right-handed alpha
Helix 12	AB3	B	494	500	Right-handed alpha
Helix 13	AB4	B	502	522	Right-handed alpha
Helix 14	AB5	B	525	531	Right-handed alpha
Helix 15	AB6	B	537	539	Right-handed 310
Helix 16	AB7	B	543	545	Right-handed 310
Helix 17	AB8	B	546	555	Right-handed alpha
Helix 18	AB9	B	556	559	Right-handed 310
Helix 19	AC1	B	565	579	Right-handed alpha
Helix 20	AC2	B	610	613	Right-handed 310
Helix 21	AC3	B	616	618	Right-handed 310
Helix 22	AC4	B	619	628	Right-handed alpha
Helix 23	AC5	B	635	646	Right-handed alpha
Helix 24	AC6	B	674	683	Right-handed alpha
Helix 25	AC7	C	498	511	Right-handed alpha
Helix 26	AC8	C	527	529	Right-handed 310
Helix 27	AC9	C	530	539	Right-handed alpha
Helix 28	AD1	C	540	543	Right-handed 310
Helix 29	AD2	C	549	564	Right-handed alpha
Helix 30	AD3	C	582	588	Right-handed 310
Helix 31	AD4	C	602	604	Right-handed 310
Helix 32	AD5	C	605	614	Right-handed alpha
Helix 33	AD6	C	621	631	Right-handed alpha
Helix 34	AD7	C	655	663	Right-handed alpha
Helix 35	AD8	C	664	675	Right-handed alpha
Helix 36	AD9	D	494	502	Right-handed alpha
Helix 37	AE1	D	502	522	Right-handed alpha
Helix 38	AE2	D	525	531	Right-handed alpha
Helix 39	AE3	D	543	545	Right-handed 310
Helix 40	AE4	D	546	555	Right-handed alpha
Helix 41	AE5	D	556	559	Right-handed 310
Helix 42	AE6	D	565	579	Right-handed alpha
Helix 43	AE7	D	610	613	Right-handed 310
Helix 44	AE8	D	619	628	Right-handed alpha
Helix 45	AE9	D	635	646	Right-handed alpha
Helix 46	AF1	D	674	683	Right-handed alpha

There are 7 sheets in PDB entry 7DG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	518	first strand
Strand 2	A	545	547	anti-parallel
Strand 3	A	568	572	parallel
Strand 4	B	664	666	anti-parallel
Strand 5	B	657	658	anti-parallel
Strand 6	B	649	652	anti-parallel
Strand 7	B	630	633	parallel
Strand 8	B	606	608	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	598	600	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	A	617	619	anti-parallel
Strand 3	A	638	640	parallel
Strand 4	A	645	646	anti-parallel
Strand 5	A	652	654	anti-parallel
Strand 6	B	585	589	anti-parallel
Strand 7	B	561	563	parallel
Strand 8	B	532	535	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	518	first strand
Strand 2	C	545	547	anti-parallel
Strand 3	C	568	572	parallel
Strand 4	D	664	666	anti-parallel
Strand 5	D	657	658	anti-parallel
Strand 6	D	649	652	anti-parallel
Strand 7	D	630	633	parallel
Strand 8	D	606	608	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	525	first strand
Strand 2	C	598	600	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	593	first strand
Strand 2	C	617	619	anti-parallel
Strand 3	C	638	640	parallel
Strand 4	C	645	646	anti-parallel
Strand 5	C	652	654	anti-parallel
Strand 6	D	585	589	anti-parallel
Strand 7	D	561	563	parallel
Strand 8	D	532	535	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	541	first strand
Strand 2	D	614	615	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DG5