Analysis of interatomic Contacts of Structural Units in PDB entry:
7DGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DGD entry

There are 2 chains in PDB entry 7DGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 35	ILE 839
B	GLN 35	ILE 839

There are 55 helices in PDB entry 7DGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	80	Right-handed alpha
Helix 2	AA2	A	80	92	Right-handed alpha
Helix 3	AA3	A	111	132	Right-handed alpha
Helix 4	AA4	A	167	176	Right-handed alpha
Helix 5	AA5	A	189	194	Right-handed 310
Helix 6	AA6	A	207	221	Right-handed alpha
Helix 7	AA7	A	234	249	Right-handed alpha
Helix 8	AA8	A	266	278	Right-handed alpha
Helix 9	AA9	A	292	306	Right-handed alpha
Helix 10	AB1	A	317	321	Right-handed 310
Helix 11	AB2	A	347	355	Right-handed alpha
Helix 12	AB3	A	356	357	Right-handed 310
Helix 13	AB4	A	358	362	Right-handed 310
Helix 14	AB5	A	367	377	Right-handed alpha
Helix 15	AB6	A	407	409	Right-handed 310
Helix 16	AB7	A	410	422	Right-handed alpha
Helix 17	AB8	A	422	431	Right-handed alpha
Helix 18	AB9	A	447	456	Right-handed alpha
Helix 19	AC1	A	573	576	Right-handed 310
Helix 20	AC2	A	593	615	Right-handed alpha
Helix 21	AC3	A	620	626	Right-handed alpha
Helix 22	AC4	A	627	649	Right-handed alpha
Helix 23	AC5	A	653	689	Right-handed alpha
Helix 24	AC6	A	702	713	Right-handed alpha
Helix 25	AC7	A	713	728	Right-handed alpha
Helix 26	AC8	A	749	770	Right-handed alpha
Helix 27	AC9	A	772	776	Right-handed 310
Helix 28	AD1	A	782	808	Right-handed alpha
Helix 29	AD2	A	810	837	Right-handed alpha
Helix 30	AD3	B	75	87	Right-handed alpha
Helix 31	AD4	B	114	119	Right-handed alpha
Helix 32	AD5	B	120	122	Right-handed 310
Helix 33	AD6	B	125	132	Right-handed alpha
Helix 34	AD7	B	166	171	Right-handed alpha
Helix 35	AD8	B	207	220	Right-handed alpha
Helix 36	AD9	B	234	252	Right-handed alpha
Helix 37	AE1	B	266	278	Right-handed alpha
Helix 38	AE2	B	292	307	Right-handed alpha
Helix 39	AE3	B	330	334	Right-handed 310
Helix 40	AE4	B	347	356	Right-handed alpha
Helix 41	AE5	B	371	377	Right-handed alpha
Helix 42	AE6	B	409	431	Right-handed alpha
Helix 43	AE7	B	449	455	Right-handed alpha
Helix 44	AE8	B	509	512	Right-handed 310
Helix 45	AE9	B	572	576	Right-handed 310
Helix 46	AF1	B	590	613	Right-handed alpha
Helix 47	AF2	B	627	649	Right-handed alpha
Helix 48	AF3	B	655	689	Right-handed alpha
Helix 49	AF4	B	702	726	Right-handed alpha
Helix 50	AF5	B	749	755	Right-handed alpha
Helix 51	AF6	B	756	770	Right-handed alpha
Helix 52	AF7	B	782	800	Right-handed alpha
Helix 53	AF8	B	800	808	Right-handed alpha
Helix 54	AF9	B	810	829	Right-handed alpha
Helix 55	AG1	B	830	839	Right-handed alpha

There are 15 sheets in PDB entry 7DGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	101	105	anti-parallel
Strand 3	A	45	49	parallel
Strand 4	A	156	159	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	201	203	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	288	290	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	342	first strand
Strand 2	A	479	486	anti-parallel
Strand 3	A	492	499	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	535	first strand
Strand 2	A	547	549	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	555	first strand
Strand 2	A	563	564	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	578	580	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	101	105	anti-parallel
Strand 3	B	45	49	parallel
Strand 4	B	156	160	parallel
Strand 5	B	182	184	parallel
Strand 6	B	201	203	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	258	first strand
Strand 2	B	226	231	parallel
Strand 3	B	287	290	parallel
Strand 4	B	314	316	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	478	480	anti-parallel
Strand 3	B	498	501	anti-parallel
Strand 4	B	504	507	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	460	first strand
Strand 2	B	466	468	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	547	549	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	558	first strand
Strand 2	B	561	564	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	733	first strand
Strand 2	B	745	746	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DGD