Analysis of interatomic Contacts of Structural Units in PDB entry:
7DGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DGE entry

There are 4 chains in PDB entry 7DGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 35	ILE 839
B	GLN 35	ILE 839
C	GLN 3	SER 125
D	GLN 3	SER 125

There are 55 helices in PDB entry 7DGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	92	Right-handed alpha
Helix 2	AA2	A	111	128	Right-handed alpha
Helix 3	AA3	A	164	176	Right-handed alpha
Helix 4	AA4	A	177	179	Right-handed 310
Helix 5	AA5	A	189	194	Right-handed 310
Helix 6	AA6	A	208	222	Right-handed alpha
Helix 7	AA7	A	234	251	Right-handed alpha
Helix 8	AA8	A	266	279	Right-handed alpha
Helix 9	AA9	A	292	307	Right-handed alpha
Helix 10	AB1	A	317	321	Right-handed 310
Helix 11	AB2	A	331	335	Right-handed 310
Helix 12	AB3	A	347	356	Right-handed alpha
Helix 13	AB4	A	367	376	Right-handed alpha
Helix 14	AB5	A	409	432	Right-handed alpha
Helix 15	AB6	A	446	457	Right-handed alpha
Helix 16	AB7	A	573	576	Right-handed 310
Helix 17	AB8	A	590	615	Right-handed alpha
Helix 18	AB9	A	627	649	Right-handed alpha
Helix 19	AC1	A	653	665	Right-handed alpha
Helix 20	AC2	A	665	687	Right-handed alpha
Helix 21	AC3	A	702	728	Right-handed alpha
Helix 22	AC4	A	750	775	Right-handed alpha
Helix 23	AC5	A	782	806	Right-handed alpha
Helix 24	AC6	A	811	831	Right-handed alpha
Helix 25	AC7	A	831	838	Right-handed alpha
Helix 26	AC8	B	75	90	Right-handed alpha
Helix 27	AC9	B	111	128	Right-handed alpha
Helix 28	AD1	B	164	177	Right-handed alpha
Helix 29	AD2	B	189	194	Right-handed 310
Helix 30	AD3	B	207	222	Right-handed alpha
Helix 31	AD4	B	234	252	Right-handed alpha
Helix 32	AD5	B	266	281	Right-handed alpha
Helix 33	AD6	B	292	307	Right-handed alpha
Helix 34	AD7	B	318	321	Right-handed 310
Helix 35	AD8	B	324	328	Right-handed 310
Helix 36	AD9	B	330	334	Right-handed 310
Helix 37	AE1	B	347	356	Right-handed alpha
Helix 38	AE2	B	368	376	Right-handed alpha
Helix 39	AE3	B	409	432	Right-handed alpha
Helix 40	AE4	B	447	456	Right-handed alpha
Helix 41	AE5	B	508	516	Right-handed 310
Helix 42	AE6	B	572	576	Right-handed 310
Helix 43	AE7	B	590	618	Right-handed alpha
Helix 44	AE8	B	627	644	Right-handed alpha
Helix 45	AE9	B	656	689	Right-handed alpha
Helix 46	AF1	B	704	727	Right-handed alpha
Helix 47	AF2	B	750	771	Right-handed alpha
Helix 48	AF3	B	772	774	Right-handed 310
Helix 49	AF4	B	782	807	Right-handed alpha
Helix 50	AF5	B	811	831	Right-handed alpha
Helix 51	AF6	B	831	838	Right-handed alpha
Helix 52	AF7	C	64	67	Right-handed 310
Helix 53	AF8	C	89	93	Right-handed 310
Helix 54	AF9	D	30	34	Right-handed 310
Helix 55	AG1	D	64	67	Right-handed 310

There are 18 sheets in PDB entry 7DGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	103	107	anti-parallel
Strand 3	A	46	51	parallel
Strand 4	A	156	160	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	201	203	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	232	first strand
Strand 2	A	254	261	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	342	first strand
Strand 2	A	479	486	anti-parallel
Strand 3	A	492	501	anti-parallel
Strand 4	A	504	507	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	466	467	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	547	548	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	558	first strand
Strand 2	A	561	564	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	578	580	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	101	107	anti-parallel
Strand 3	B	45	51	parallel
Strand 4	B	159	160	parallel
Strand 5	B	182	183	parallel
Strand 6	B	201	202	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	228	232	parallel
Strand 3	B	286	290	parallel
Strand 4	B	313	316	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	342	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	495	500	anti-parallel
Strand 4	B	505	506	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	547	549	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	570	first strand
Strand 2	B	579	580	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	20	27	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	71	75	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	123	124	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	112	115	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	35	41	anti-parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DGE