Analysis of interatomic Contacts of Structural Units in PDB entry:
7DH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DH5 entry

There are 5 chains in PDB entry 7DH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 384
B	GLN 1	ASN 340
G	ALA 10	PHE 61
N	GLN 1	SER 128
R	ALA 36	LEU 360

There are 30 helices in PDB entry 7DH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	235	239	Right-handed 310
Helix 4	AA4	A	252	255	Right-handed 310
Helix 5	AA5	A	256	268	Right-handed alpha
Helix 6	AA6	A	283	294	Right-handed alpha
Helix 7	AA7	A	297	302	Right-handed alpha
Helix 8	AA8	A	303	306	Right-handed 310
Helix 9	AA9	A	321	341	Right-handed alpha
Helix 10	AB1	A	362	381	Right-handed alpha
Helix 11	AB2	B	2	25	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	B	35	37	Right-handed 310
Helix 14	AB5	G	11	23	Right-handed alpha
Helix 15	AB6	G	29	45	Right-handed alpha
Helix 16	AB7	G	46	48	Right-handed 310
Helix 17	AB8	N	28	32	Right-handed 310
Helix 18	AB9	N	62	65	Right-handed 310
Helix 19	AC1	N	87	91	Right-handed 310
Helix 20	AC2	R	39	64	Right-handed alpha
Helix 21	AC3	R	72	90	Right-handed alpha
Helix 22	AC4	R	90	100	Right-handed alpha
Helix 23	AC5	R	106	141	Right-handed alpha
Helix 24	AC6	R	150	170	Right-handed alpha
Helix 25	AC7	R	188	192	Right-handed 310
Helix 26	AC8	R	201	213	Right-handed alpha
Helix 27	AC9	R	213	241	Right-handed alpha
Helix 28	AD1	R	289	318	Right-handed alpha
Helix 29	AD2	R	324	346	Right-handed alpha
Helix 30	AD3	R	349	358	Right-handed alpha

There are 11 sheets in PDB entry 7DH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	248	parallel
Strand 5	A	276	281	parallel
Strand 6	A	349	353	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	158	160	anti-parallel
Strand 3	B	167	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	123	126	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	37	39	anti-parallel
Strand 5	N	45	47	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	49	50	first strand
Strand 2	N	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DH5