Analysis of interatomic Contacts of Structural Units in PDB entry:
7DHI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DHI entry

There are 5 chains in PDB entry 7DHI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 394
B	GLN 6	ASN 340
G	GLN 11	ARG 62
N	GLN 1	VAL 126
R	GLU 30	CYS 341

There are 35 helices in PDB entry 7DHI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	38	Right-handed alpha
Helix 2	AA2	A	234	238	Right-handed 310
Helix 3	AA3	A	264	278	Right-handed alpha
Helix 4	AA4	A	296	302	Right-handed alpha
Helix 5	AA5	A	312	316	Right-handed 310
Helix 6	AA6	A	331	350	Right-handed alpha
Helix 7	AA7	A	367	370	Right-handed 310
Helix 8	AA8	A	371	391	Right-handed alpha
Helix 9	AA9	B	7	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	B	35	37	Right-handed 310
Helix 12	AB3	G	12	22	Right-handed alpha
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	G	45	48	Right-handed 310
Helix 15	AB6	N	28	32	Right-handed 310
Helix 16	AB7	N	62	65	Right-handed 310
Helix 17	AB8	N	87	91	Right-handed 310
Helix 18	AB9	R	31	40	Right-handed alpha
Helix 19	AC1	R	40	51	Right-handed alpha
Helix 20	AC2	R	51	59	Right-handed alpha
Helix 21	AC3	R	67	79	Right-handed alpha
Helix 22	AC4	R	79	86	Right-handed alpha
Helix 23	AC5	R	86	97	Right-handed alpha
Helix 24	AC6	R	105	137	Right-handed alpha
Helix 25	AC7	R	138	141	Right-handed 310
Helix 26	AC8	R	149	161	Right-handed alpha
Helix 27	AC9	R	166	171	Right-handed alpha
Helix 28	AD1	R	201	208	Right-handed alpha
Helix 29	AD2	R	208	220	Right-handed alpha
Helix 30	AD3	R	222	237	Right-handed alpha
Helix 31	AD4	R	269	274	Right-handed alpha
Helix 32	AD5	R	274	292	Right-handed alpha
Helix 33	AD6	R	306	314	Right-handed alpha
Helix 34	AD7	R	317	326	Right-handed alpha
Helix 35	AD8	R	329	340	Right-handed alpha

There are 11 sheets in PDB entry 7DHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	243	245	parallel
Strand 5	A	286	292	parallel
Strand 6	A	248	249	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	243	245	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	306	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DHI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DHI