Analysis of interatomic Contacts of Structural Units in PDB entry:
7DHR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DHR entry

There are 5 chains in PDB entry 7DHR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	ARG 8	ASN 340
G	ALA 12	PRO 60
N	GLN 1	VAL 126
R	GLU 30	LEU 339

There are 35 helices in PDB entry 7DHR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	29	32	Right-handed 310
Helix 3	AA3	A	33	38	Right-handed alpha
Helix 4	AA4	A	265	269	Right-handed alpha
Helix 5	AA5	A	270	278	Right-handed alpha
Helix 6	AA6	A	295	300	Right-handed alpha
Helix 7	AA7	A	312	316	Right-handed 310
Helix 8	AA8	A	331	345	Right-handed alpha
Helix 9	AA9	A	345	350	Right-handed alpha
Helix 10	AB1	A	372	390	Right-handed alpha
Helix 11	AB2	B	13	25	Right-handed alpha
Helix 12	AB3	G	19	24	Right-handed alpha
Helix 13	AB4	G	29	34	Right-handed alpha
Helix 14	AB5	G	34	44	Right-handed alpha
Helix 15	AB6	G	45	48	Right-handed 310
Helix 16	AB7	R	31	49	Right-handed alpha
Helix 17	AB8	R	66	70	Right-handed 310
Helix 18	AB9	R	71	76	Right-handed 310
Helix 19	AC1	R	77	86	Right-handed alpha
Helix 20	AC2	R	88	93	Right-handed alpha
Helix 21	AC3	R	105	116	Right-handed alpha
Helix 22	AC4	R	121	136	Right-handed alpha
Helix 23	AC5	R	154	159	Right-handed alpha
Helix 24	AC6	R	159	164	Right-handed alpha
Helix 25	AC7	R	198	203	Right-handed alpha
Helix 26	AC8	R	213	218	Right-handed alpha
Helix 27	AC9	R	219	221	Right-handed 310
Helix 28	AD1	R	222	227	Right-handed alpha
Helix 29	AD2	R	228	237	Right-handed alpha
Helix 30	AD3	R	281	286	Right-handed alpha
Helix 31	AD4	R	287	291	Right-handed 310
Helix 32	AD5	R	294	299	Right-handed alpha
Helix 33	AD6	R	312	316	Right-handed 310
Helix 34	AD7	R	317	326	Right-handed alpha
Helix 35	AD8	R	329	336	Right-handed alpha

There are 11 sheets in PDB entry 7DHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	247	parallel
Strand 5	A	288	291	parallel
Strand 6	A	360	363	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	329	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	112	114	anti-parallel
Strand 3	B	121	124	anti-parallel
Strand 4	B	135	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	156	157	anti-parallel
Strand 3	B	169	170	anti-parallel
Strand 4	B	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	262	264	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	21	first strand
Strand 2	N	79	84	anti-parallel
Strand 3	N	69	72	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	92	96	anti-parallel
Strand 3	N	123	124	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DHR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DHR