Analysis of interatomic Contacts of Structural Units in PDB entry:
7DI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DI3 entry

There is 1 chain in PDB entry 7DI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4TRP 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7DI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 25Right-handed 310
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
92 102Right-handed alpha
Helix 4
AA4
A
103 105Right-handed 310
Helix 5
AA5
A
106 113Right-handed alpha
Helix 6
AA6
A
113 132Right-handed alpha
Helix 7
AA7
A
137 141Right-handed alpha
Helix 8
AA8
A
143 155Right-handed alpha
Helix 9
AA9
A
157 159Right-handed 310
Helix 10
AB1
A
160 174Right-handed alpha
Helix 11
AB2
A
176 200Right-handed alpha
Helix 12
AB3
A
205 218Right-handed alpha
Helix 13
AB4
A
221 253Right-handed alpha
Helix 14
AB5
A
254 264Right-handed alpha
Helix 15
AB6
A
267 280Right-handed alpha
Helix 16
AB7
A
309 314Right-handed alpha
Helix 17
AB8
A
340 344Right-handed 310
Helix 18
AB9
A
347 366Right-handed alpha
Helix 19
AC1
A
374 378Right-handed 310
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There are 3 sheets in PDB entry 7DI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
305 308parallel
Strand 4
A
285 289anti-parallel
Strand 5
A
59 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
393 395anti-parallel
Strand 3
A
370 371anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
298 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il