Analysis of interatomic Contacts of Structural Units in PDB entry:
7DIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DIB entry

There are 4 chains in PDB entry 7DIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 48
A
 SER 50PHE 376
B
 ALA 3ALA 48
B
 SER 50PHE 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7DIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
23 40Right-handed alpha
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
95 107Right-handed alpha
Helix 6
AA6
A
117 131Right-handed alpha
Helix 7
AA7
A
153 166Right-handed alpha
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
A
186 210Right-handed alpha
Helix 10
AB1
A
225 232Right-handed alpha
Helix 11
AB2
A
241 245Right-handed 310
Helix 12
AB3
A
247 252Right-handed alpha
Helix 13
AB4
A
322 326Right-handed 310
Helix 14
AB5
A
339 345Right-handed alpha
Helix 15
AB6
B
10 14Right-handed 310
Helix 16
AB7
B
23 40Right-handed alpha
Helix 17
AB8
B
53 63Right-handed alpha
Helix 18
AB9
B
72 82Right-handed alpha
Helix 19
AC1
B
95 107Right-handed alpha
Helix 20
AC2
B
117 132Right-handed alpha
Helix 21
AC3
B
153 166Right-handed alpha
Helix 22
AC4
B
178 183Right-handed alpha
Helix 23
AC5
B
186 210Right-handed alpha
Helix 24
AC6
B
225 232Right-handed alpha
Helix 25
AC7
B
241 245Right-handed 310
Helix 26
AC8
B
247 252Right-handed alpha
Helix 27
AC9
B
322 326Right-handed 310
Helix 28
AD1
B
339 345Right-handed alpha
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There are 6 sheets in PDB entry 7DIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
332 336anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
281 284anti-parallel
Strand 5
A
316 319anti-parallel
Strand 6
A
307 309anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
332 336anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
18 22anti-parallel
Strand 5
A
349 354parallel
Strand 6
A
362 368anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
237 238parallel
Strand 3
A
217 220parallel
Strand 4
A
169 176parallel
Strand 5
A
135 140parallel
Strand 6
A
110 115parallel
Strand 7
A
86 89parallel
Strand 8
A
68 70parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
332 336anti-parallel
Strand 3
B
267 275anti-parallel
Strand 4
B
281 284anti-parallel
Strand 5
B
316 320anti-parallel
Strand 6
B
306 309anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
332 336anti-parallel
Strand 3
B
267 275anti-parallel
Strand 4
B
18 22anti-parallel
Strand 5
B
349 354parallel
Strand 6
B
362 368anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
237 238parallel
Strand 3
B
217 220parallel
Strand 4
B
169 176parallel
Strand 5
B
135 141parallel
Strand 6
B
110 115parallel
Strand 7
B
86 89parallel
Strand 8
B
68 70parallel
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