Analysis of interatomic Contacts of Structural Units in PDB entry:
7DID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DID entry

There are 3 chains in PDB entry 7DID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 82ILE 725
C
 A 5 A 6
C
 A 8 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7DID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 92Right-handed 310
Helix 2
AA2
A
109 113Right-handed 310
Helix 3
AA3
A
183 186Right-handed 310
Helix 4
AA4
A
223 235Right-handed alpha
Helix 5
AA5
A
242 252Right-handed alpha
Helix 6
AA6
A
255 261Right-handed 310
Helix 7
AA7
A
304 309Right-handed alpha
Helix 8
AA8
A
313 323Right-handed alpha
Helix 9
AA9
A
338 343Right-handed alpha
Helix 10
AB1
A
387 395Right-handed alpha
Helix 11
AB2
A
403 428Right-handed alpha
Helix 12
AB3
A
456 480Right-handed alpha
Helix 13
AB4
A
493 506Right-handed alpha
Helix 14
AB5
A
520 530Right-handed alpha
Helix 15
AB6
A
536 549Right-handed alpha
Helix 16
AB7
A
577 591Right-handed alpha
Helix 17
AB8
A
593 597Right-handed 310
Helix 18
AB9
A
598 640Right-handed alpha
Helix 19
AC1
A
675 677Right-handed 310
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There are 9 sheets in PDB entry 7DID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
105 108anti-parallel
Strand 4
A
136 145parallel
Strand 5
A
121 126anti-parallel
Strand 6
A
83 88anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 170first strand
Strand 2
A
151 160anti-parallel
Strand 3
A
194 204anti-parallel
Strand 4
A
209 220anti-parallel
Strand 5
A
178 181parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
369 380parallel
Strand 3
A
353 364anti-parallel
Strand 4
A
295 303anti-parallel
Strand 5
A
285 292anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
383 386parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
332 334anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
447 452anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
552 554anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 655first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
669 673anti-parallel
Strand 4
A
719 724parallel
Strand 5
A
705 714anti-parallel
Strand 6
A
646 655anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 685first strand
Strand 2
A
690 693anti-parallel
Strand 3
A
699 700anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il