Analysis of interatomic Contacts of Structural Units in PDB entry:
7DIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DIJ entry

There is 1 chain in PDB entry 7DIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 59GLU 1193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 7DIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 64Right-handed alpha
Helix 2
AA2
A
126 135Right-handed alpha
Helix 3
AA3
A
136 138Right-handed 310
Helix 4
AA4
A
146 154Right-handed alpha
Helix 5
AA5
A
177 194Right-handed alpha
Helix 6
AA6
A
195 199Right-handed 310
Helix 7
AA7
A
200 208Right-handed alpha
Helix 8
AA8
A
238 248Right-handed alpha
Helix 9
AA9
A
250 264Right-handed alpha
Helix 10
AB1
A
267 271Right-handed 310
Helix 11
AB2
A
276 281Right-handed alpha
Helix 12
AB3
A
284 296Right-handed alpha
Helix 13
AB4
A
311 325Right-handed alpha
Helix 14
AB5
A
409 425Right-handed alpha
Helix 15
AB6
A
429 439Right-handed alpha
Helix 16
AB7
A
474 476Right-handed 310
Helix 17
AB8
A
477 497Right-handed alpha
Helix 18
AB9
A
499 518Right-handed alpha
Helix 19
AC1
A
522 537Right-handed alpha
Helix 20
AC2
A
543 545Right-handed 310
Helix 21
AC3
A
546 561Right-handed alpha
Helix 22
AC4
A
563 573Right-handed alpha
Helix 23
AC5
A
588 609Right-handed alpha
Helix 24
AC6
A
610 630Right-handed alpha
Helix 25
AC7
A
633 638Right-handed alpha
Helix 26
AC8
A
644 648Right-handed 310
Helix 27
AC9
A
669 679Right-handed alpha
Helix 28
AD1
A
680 696Right-handed alpha
Helix 29
AD2
A
752 757Right-handed alpha
Helix 30
AD3
A
758 769Right-handed alpha
Helix 31
AD4
A
775 787Right-handed alpha
Helix 32
AD5
A
825 839Right-handed alpha
Helix 33
AD6
A
844 866Right-handed alpha
Helix 34
AD7
A
866 875Right-handed alpha
Helix 35
AD8
A
880 890Right-handed alpha
Helix 36
AD9
A
891 908Right-handed alpha
Helix 37
AE1
A
908 924Right-handed alpha
Helix 38
AE2
A
936 939Right-handed 310
Helix 39
AE3
A
940 945Right-handed alpha
Helix 40
AE4
A
947 961Right-handed alpha
Helix 41
AE5
A
962 965Right-handed 310
Helix 42
AE6
A
979 988Right-handed alpha
Helix 43
AE7
A
1024 1036Right-handed alpha
Helix 44
AE8
A
1036 1043Right-handed alpha
Helix 45
AE9
A
1071 1080Right-handed alpha
Helix 46
AF1
A
1080 1092Right-handed alpha
Helix 47
AF2
A
1093 1109Right-handed alpha
Helix 48
AF3
A
1114 1127Right-handed alpha
Helix 49
AF4
A
1130 1143Right-handed alpha
Helix 50
AF5
A
1145 1159Right-handed alpha
Helix 51
AF6
A
1159 1164Right-handed alpha
Helix 52
AF7
A
1172 1183Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7DIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
84 91anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
302 307parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
168 175anti-parallel
Strand 7
A
157 164anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 355first strand
Strand 2
A
579 587parallel
Strand 3
A
363 370anti-parallel
Strand 4
A
457 465anti-parallel
Strand 5
A
443 450anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 662first strand
Strand 2
A
727 733anti-parallel
Strand 3
A
929 935parallel
Strand 4
A
739 747anti-parallel
Strand 5
A
812 822anti-parallel
Strand 6
A
789 797anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1050 1055first strand
Strand 2
A
1060 1066anti-parallel
Strand 3
A
1008 1014anti-parallel
Strand 4
A
1166 1171anti-parallel
Strand 5
A
996 1001parallel
Strand 6
A
1188 1191parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il